BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0249600 Os07g0249600|AK067442
         (382 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08370.1  | chr1:2638355-2640367 FORWARD LENGTH=368            267   6e-72

>AT1G08370.1 | chr1:2638355-2640367 FORWARD LENGTH=368
          Length = 367

 Score =  267 bits (683), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 162/207 (78%), Gaps = 10/207 (4%)

Query: 9   AKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKDVEGSL 68
            K+ PNL  D+  TR+LN+TVLQR+DP +E+ILITA HVT Y+F+  L+QWSRKDVEGSL
Sbjct: 5   GKIIPNL--DQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSL 62

Query: 69  FVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQE 128
           FVVKR+ QPRFQF+VMNRRNTDNLVE+LLGDFEY++Q PY++YRNA+QEV GIWFYN +E
Sbjct: 63  FVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRE 122

Query: 129 CEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTL--VEGPLEPQTSNIIPATTH 186
           CEEVA LF+RIL+A+SK   KPKA S KSEFEELEA PT+  ++GPLEP ++        
Sbjct: 123 CEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPLEPSST-----ARD 177

Query: 187 VQEDP-LSAFFSGAINVGSASGLSVAG 212
             +DP    FFS  +N+G+ +  S +G
Sbjct: 178 APDDPAFVNFFSSTMNLGNTASGSASG 204



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,732,026
Number of extensions: 312038
Number of successful extensions: 1225
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 282
Effective length of database: 8,364,969
Effective search space: 2358921258
Effective search space used: 2358921258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)