BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0247100 Os07g0247100|AK068864
         (357 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02405.1  | chr4:1057999-1059671 REVERSE LENGTH=334            248   4e-66

>AT4G02405.1 | chr4:1057999-1059671 REVERSE LENGTH=334
          Length = 333

 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/282 (45%), Positives = 177/282 (62%), Gaps = 12/282 (4%)

Query: 76  LDGALRAARFRDEESRRPDPLFIDPYAAVLLSLDVASEDKDLLALHLMPSAEHYRLVTRY 135
           +  AL +A  R  E+ R +PLFIDPYAA  L        KDL    +    +HY L T++
Sbjct: 64  IQSALVSASHRLRETNRTEPLFIDPYAACFLP---PYTKKDL---DIHEQQQHYCLATKF 117

Query: 136 IDDKLQHFISNSDDLRQIVLLTDGMDTRPYRLSWPRLSVVYDVSPRRVFITASQQLRGAG 195
           IDDKL       D L+Q+VL TDGMDTRPYRL+WP  ++++DVSP +VF  AS++L+G G
Sbjct: 118 IDDKLLEIAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMIFDVSPEKVFEIASEKLQGVG 177

Query: 196 AKISRNCVVLHTSSESPDLQAGLNKNGFNGNRPSLWVLQGLPLFTFKSLEDLLLVIGNLA 255
           A+I ++C+  H   E  +++  L   GF+GNRPS+W +QGLPL +    E +L  I +LA
Sbjct: 178 ARIPKSCLFFHIPVEFENIEQRLRSKGFSGNRPSIWAMQGLPLESQSGFEAILSAISSLA 237

Query: 256 MKGSIFIGEVPRFTQWGAATDMASEQDRLENLFFTQGFRVSFVHYEEVAKDVGLGLDSPP 315
           M     IGE+P  T     +D++     +E LF + GFRV  V YEE+A  +G+ L SP 
Sbjct: 238 MNECYLIGELP--TNITLQSDLSK---WMEKLFMSNGFRVKIVSYEEIAASLGVVLHSPV 292

Query: 316 EIHGRAIFIAEQLRFSDAQMESFRMHFERIEDDADEDGFEEL 357
             H   +FIA+QL+FSD QME++R  F+R+E+D DE GFEEL
Sbjct: 293 N-HDTVLFIAQQLKFSDDQMETWRQEFQRVEEDGDEQGFEEL 333



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,412,933
Number of extensions: 300589
Number of successful extensions: 664
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,364,969
Effective search space: 2149797033
Effective search space used: 2149797033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)