BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0246600 Os07g0246600|J065085F23
(347 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16100.1 | chr4:9105809-9107986 FORWARD LENGTH=395 125 4e-29
AT2G01260.1 | chr2:135494-137504 REVERSE LENGTH=370 124 1e-28
AT1G15030.1 | chr1:5177895-5179853 FORWARD LENGTH=361 113 2e-25
AT5G49220.1 | chr5:19956627-19958453 FORWARD LENGTH=410 109 2e-24
AT4G28150.1 | chr4:13977642-13978912 REVERSE LENGTH=286 92 3e-19
AT1G03610.1 | chr1:901304-902672 FORWARD LENGTH=309 92 3e-19
AT4G03420.1 | chr4:1512226-1513594 FORWARD LENGTH=311 87 1e-17
AT1G73210.1 | chr1:27528428-27530453 REVERSE LENGTH=315 81 9e-16
AT1G17830.1 | chr1:6136118-6138172 REVERSE LENGTH=338 74 2e-13
AT5G23380.1 | chr5:7866742-7870098 FORWARD LENGTH=302 56 3e-08
>AT4G16100.1 | chr4:9105809-9107986 FORWARD LENGTH=395
Length = 394
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 99/183 (54%), Gaps = 40/183 (21%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
NL RFL TTP V Q+LP TS +GWR+ + PYF L DLW++F EWS YG GVP++
Sbjct: 88 NLGRFLDCTTPIVSTQHLPLTSSKGWRTREP-EYRPYFLLNDLWDSFEEWSAYGVGVPLL 146
Query: 211 LNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQLRG 270
LNG DSV+QYYVPYLS IQLY DPS+ T R +D D R
Sbjct: 147 LNGIDSVVQYYVPYLSGIQLYEDPSRACTTRRR---------------VGEESDGDSPRD 191
Query: 271 LENGGFQ--REDSESHFPST---RP-------------------LFEYLEKDPPYGREPL 306
+ + G RE S++ + ++ +P +FEYLE P+GREPL
Sbjct: 192 MSSDGSNDCRELSQNLYRASLEEKPCIGSSSDESEASSNSPGELVFEYLEGAMPFGREPL 251
Query: 307 TDK 309
TDK
Sbjct: 252 TDK 254
>AT2G01260.1 | chr2:135494-137504 REVERSE LENGTH=370
Length = 369
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 101 RQKEVERRVDAVVQSKPSVSPLPSSADVKXXXXXXXXXXXXXXXXXXXXGNLERFLSSTT 160
+ + +R+D + +++ VS +PSSA NL+RFL S T
Sbjct: 23 KTRRANQRIDQLRRAQSDVSNVPSSA--------PSPHKQQLEPSDLSSSNLDRFLESVT 74
Query: 161 PSVPVQYLPKTSMRGWRSGDAMNS-SPYFCLGDLWEAFNEWSFYGAGVPVVL-NGKDSVI 218
PSVP Q+L KT +R R+ D N PYF LGD+W++F EWS YG GVP+VL N KD VI
Sbjct: 75 PSVPAQFLSKTLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVLNNNKDRVI 134
Query: 219 QYYVPYLSAIQLYADPS--KHSTRIRHP---------WXXXXXXXXXXXXXXXXGTDADQ 267
QYYVP LSAIQ+YA S + R P D
Sbjct: 135 QYYVPSLSAIQIYAHSHALDSSLKSRRPGDSSDSDFRDSSSDVSSDSDSERVSARVDCIS 194
Query: 268 LRGLENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDKA 310
LR +D E R +FEYLE+D PY REP DK
Sbjct: 195 LRDQHQEDSSSDDGEPLGSQGRLMFEYLERDLPYIREPFADKV 237
>AT1G15030.1 | chr1:5177895-5179853 FORWARD LENGTH=361
Length = 360
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
N+ERFL S TPSVP YL KT +R D + PYF LGD+WE+F EWS YG GVP+
Sbjct: 48 NVERFLDSVTPSVPAHYLSKTIVRERGGSDVESQVPYFLLGDVWESFAEWSAYGIGVPLT 107
Query: 211 L-NGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXX--------------- 254
L N KD V QYYVP LS IQ+YAD ++ ++
Sbjct: 108 LNNNKDRVFQYYVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERG 167
Query: 255 ---XXXXXXXGTDADQLRGLENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDK 309
D LR +D E R +FEYLE+D PY REP DK
Sbjct: 168 LCYSKEQISARMDKLSLRKEHQEDSSSDDGEPLSSQGRLIFEYLERDLPYVREPFADK 225
>AT5G49220.1 | chr5:19956627-19958453 FORWARD LENGTH=410
Length = 409
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
NL+RFL TTP VP + P S ++ ++ + YF L DLWE+F EWS YGAGVP+
Sbjct: 108 NLDRFLEHTTPVVPARLFPMRSRWELKTRES-DCHTYFVLEDLWESFAEWSAYGAGVPLE 166
Query: 211 LN-----GKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTD- 264
++ G DS +QYYVPYLS IQLY DP K + R+P D
Sbjct: 167 MHPLEMHGNDSTVQYYVPYLSGIQLYVDPLK---KPRNPVGDNEGSSEGSSNSRTLPVDL 223
Query: 265 -ADQLRGLE------NGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDK 309
+L + G ++E P R LFEYLE +PP+GREPL +K
Sbjct: 224 SVGELNRISLKDQSITGSLSSGEAEISNPQGRLLFEYLEYEPPFGREPLANK 275
>AT4G28150.1 | chr4:13977642-13978912 REVERSE LENGTH=286
Length = 285
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 81/173 (46%), Gaps = 27/173 (15%)
Query: 150 GNLERFLSSTTPSVPVQYLPKTSMRG----WRSGDAMNSSPYFCLGDLWEAFNEWSFYGA 205
NL+RFL TTP VP LPKT ++ W ++ S YF LGD W+ F+EWS YGA
Sbjct: 8 SNLDRFLRCTTPIVPAYSLPKTQIKNLNPLWYPLES-QSVEYFRLGDFWDCFDEWSAYGA 66
Query: 206 GVPVVLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDA 265
GVP+V ++++QYYVPYLSAIQ++ S +T G
Sbjct: 67 GVPIVSETGETLVQYYVPYLSAIQIFTSHSVINT---------------LREETESGDSG 111
Query: 266 DQLRGLENGGFQREDSESHFPSTRPL-------FEYLEKDPPYGREPLTDKAR 311
+ E SE F PL +Y E+ PY R PL DK +
Sbjct: 112 SESCSEEWRWEGCSSSEEGFDHQEPLDRLGYSYLQYFERCTPYSRVPLMDKIK 164
>AT1G03610.1 | chr1:901304-902672 FORWARD LENGTH=309
Length = 308
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRG----WRSGDAMNSSPYFCLGDLWEAFNEWSFYGAG 206
NL+RFL TP VP Q LPKT +R W + +F L DLW+ ++EWS YGA
Sbjct: 12 NLDRFLHCITPLVPPQSLPKTEIRTLNRLWHPWERQKVE-FFRLSDLWDCYDEWSAYGAS 70
Query: 207 VPVVLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDAD 266
VP+ + +S++QYYVPYLSAIQ++ + HS+ IR G+D
Sbjct: 71 VPIHVTNGESLVQYYVPYLSAIQIF---TSHSSLIRLREESEDGECEGRDPFSDSGSDES 127
Query: 267 -QLRGLENGGFQREDSESHFPSTR---PLFEYLEKDPPYGREPLTDK 309
GLEN PS R +Y E+ PY R PL DK
Sbjct: 128 VSEEGLENNTLLH-------PSDRLGYLYLQYFERSAPYTRVPLMDK 167
>AT4G03420.1 | chr4:1512226-1513594 FORWARD LENGTH=311
Length = 310
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRG----WRSGDAMNSSPYFCLGDLWEAFNEWSFYGAG 206
NL+RFL TTP VP Q L K +R W + +F L DLW+ ++EWS YGAG
Sbjct: 8 NLDRFLHCTTPVVPPQSLSKAEIRSLNRIWHPWER-QKVEFFRLSDLWDCYDEWSAYGAG 66
Query: 207 VPVVLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDAD 266
VP+ L+ +S++QYYVPYLSAIQ++ S R+R
Sbjct: 67 VPIRLSNGESLVQYYVPYLSAIQIFTSRSS-LIRLRDDSEDGESRDSFSDSYSDESESDK 125
Query: 267 QLRGLENGGFQREDSESHFPSTR---PLFEYLEKDPPYGREPLTDK 309
R + G + D+ H P+ R +Y E+ PY R PL DK
Sbjct: 126 LSRCASDEGLE-HDALLH-PNDRLGYLYLQYFERSAPYARVPLMDK 169
>AT1G73210.1 | chr1:27528428-27530453 REVERSE LENGTH=315
Length = 314
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 29/177 (16%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
NLERFL TP P LP+ + YF LGDLW+ ++E S YG G V
Sbjct: 13 NLERFLLGITPKPPSFSLPQEQGK--------EEIEYFRLGDLWDCYDEMSAYGFGTQVD 64
Query: 211 LNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQL-- 268
LN ++V+QYYVPYLSAIQ++ + +R ++ +++++L
Sbjct: 65 LNNGETVMQYYVPYLSAIQIHTNKPALLSRNQN------EVAESESSEGWSDSESEKLLS 118
Query: 269 RGLENGGFQREDSESH----FPSTRPL---------FEYLEKDPPYGREPLTDKARA 312
R + N + D+ S P PL F+Y+E+DPP+ R PLTDK
Sbjct: 119 RSMSNDSSKTWDAVSEDSVFDPDGSPLLKDRLGNLDFKYIERDPPHKRIPLTDKINV 175
>AT1G17830.1 | chr1:6136118-6138172 REVERSE LENGTH=338
Length = 337
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRS---GDAMNSSPYFCLGDLWEAFNEWSFYGAGV 207
NLERFL TP P L ++ S + + YF L DLW+ F+E S YG G
Sbjct: 19 NLERFLRGITPKPPSFSLSQSCKNDLNSLWIHENKDEIEYFRLSDLWDCFDEPSAYGLGS 78
Query: 208 PVVLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIR 242
V LN +SV+QYYVPYLSAIQ+Y + S +RI
Sbjct: 79 KVDLNNGESVMQYYVPYLSAIQIYTNKSTAISRIH 113
>AT5G23380.1 | chr5:7866742-7870098 FORWARD LENGTH=302
Length = 301
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNS-------SPYFCLGDLWEAFNEWSFY 203
N ERFL ++P VP+Q+ + S A+ + P L D+W A WS
Sbjct: 8 NFERFLECSSPRVPIQFYTQARGSSSSSPIALGAIEEEEVRKPRIVLNDIWSACKNWSTV 67
Query: 204 GAGVPVVLNGKDS-VIQYYVPYLSAIQLYA 232
G VP+ L DS V QYY P LSAIQ++
Sbjct: 68 GIEVPLSLENFDSDVKQYYNPSLSAIQIFT 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,724,367
Number of extensions: 213460
Number of successful extensions: 375
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 10
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)