BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0235600 Os07g0235600|Os07g0235600
         (1250 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43760.1  | chr1:16528880-16531065 REVERSE LENGTH=627          100   5e-21

>AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627
          Length = 626

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 156/364 (42%), Gaps = 39/364 (10%)

Query: 900  NAVIDSFDLRGIALTGRQFTWANSLP-SPTYEKLDRVLMTTEWESKYPLVSVQALDRGLS 958
            N + DS DL  I   G  +TW+N    +P   KLDR +   +W S +P         G+S
Sbjct: 254  NCLRDS-DLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVS 312

Query: 959  DHTPLLLDTGSSAFSGNRAQFKLELGWFLRD--DFRDRVVEIWNKPVKGRNPVQRWNNKM 1016
            DH+P ++   +      R++       FL     F   +   W + +    PV    + M
Sbjct: 313  DHSPCIIILENLP---KRSKKCFRYFSFLSTHPTFLVSLTVAWEEQI----PV---GSHM 362

Query: 1017 SALRRHLRGWAAHTSGSYKQEKNTVQNIIDE-LDITAEVRE--LTDSER-----EHLAQS 1068
             +L  HL+          +Q    +Q+   E LD    ++   LT+        EH+A+ 
Sbjct: 363  FSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARK 422

Query: 1069 R-----DQLSRLFREEE-IKWYQRAKVTDVLLGDNNTKYYHMVANGKKRKKRIFFLDQDK 1122
            +       L   +R++  IKW Q         GD NT+++H V    + K  I FL  D 
Sbjct: 423  KWNFFAAALESFYRQKSRIKWLQD--------GDANTRFFHKVILANQAKNLIKFLRMDD 474

Query: 1123 G-KIEGNIALKSYITKFYKNLFGPPEDTSITLDESRIEDI-PQVTNEE-NEFLTAPFSED 1179
              ++E    +K  I  +Y +L G   D        RI+DI P   N+     L+A  S+ 
Sbjct: 475  DVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDK 534

Query: 1180 EIRGAVFEMEHNKAPGPDGFPAEFYQNFWEVIKVDLMNLFRDFHMGDLPLFSLNFGIIIL 1239
            EI  AVF M  NKAPGPD F AEF+   W V+K   +   ++F      L   N   I L
Sbjct: 535  EITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITL 594

Query: 1240 LPKV 1243
            +PKV
Sbjct: 595  IPKV 598



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 27,719,748
Number of extensions: 1227977
Number of successful extensions: 3325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3324
Number of HSP's successfully gapped: 1
Length of query: 1250
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1140
Effective length of database: 8,090,809
Effective search space: 9223522260
Effective search space used: 9223522260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)