BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0227400 Os07g0227400|AK069634
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 371 e-103
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 356 6e-99
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 264 4e-71
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 262 2e-70
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 252 1e-67
AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805 106 2e-23
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 222/286 (77%), Gaps = 11/286 (3%)
Query: 4 GLYNHQG-FSPARTLSPQIRSNPEADS-QYLSELLAEHHKLGPFMQVLPICSRLLNQEIM 61
GLYN+ FSPAR SPQIRS PE DS QYL+ELLAEH KL PFMQVLPICSRLLNQE+
Sbjct: 3 GLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMF 62
Query: 62 RVSSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGT 121
RVS M+++ GF DFD N+ G G WNG+ QERL G
Sbjct: 63 RVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLS----GTPGM 118
Query: 122 SMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIR 181
+MDWQGAP S SY VK+I+R+E+PVD YPNFNFVGR+LGPRGNSLKRVEA+TGCRVFIR
Sbjct: 119 TMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIR 178
Query: 182 GKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDE 241
GKGSIKD +KE+KL+G+PGYEHLN+ LHILIEA+LPA+I++ RLRQAQEI++ELLKPVDE
Sbjct: 179 GKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDE 238
Query: 242 SQDYYKRQQLRELAMLNS-TLREDSPHP---GSVSPFSNGGMKRAK 283
SQD+ KRQQLRELA+LNS LRE+SP P GSVSPF++ G KR K
Sbjct: 239 SQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPK 283
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 356 bits (914), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/282 (65%), Positives = 222/282 (78%), Gaps = 6/282 (2%)
Query: 4 GLYNHQGFSPARTLSPQIRS-NPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMR 62
GLYN+ FSP+R SPQIR+ + + DSQY+S+LLAEH KLGPFMQVLPICSRLLNQEI R
Sbjct: 3 GLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEIFR 62
Query: 63 VSSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTS 122
++ M+ + GF DFD N+ G G G WNG+ ER+G G +
Sbjct: 63 ITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIG----GPHGMA 118
Query: 123 MDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG 182
M+WQGAP S SY VK+I+R+++PVD YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IRG
Sbjct: 119 MEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178
Query: 183 KGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDES 242
KGSIKD +KEEKLKGKPGYEHLN+ LHILIEA+LP +I+D +LRQAQEI++EL+KPVDES
Sbjct: 179 KGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDES 238
Query: 243 QDYYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAK 283
QDY KRQQLRELA+LNS LRE+SP P GSVSPF++ MKR K
Sbjct: 239 QDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPK 280
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 184/270 (68%), Gaps = 19/270 (7%)
Query: 21 IRSNPE---ADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRVSSMV-NDHGFNDFD 76
+RS P +YLSELLAE HKL PF+ VLP RL+NQEI+RV++++ N + FD
Sbjct: 48 LRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALSQSRFD 107
Query: 77 XXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSM--DWQGAPPSHGS 134
+ N NG + F +S +W +P S
Sbjct: 108 HPSPLASG---------GIFQNSRADMNGWASQ---FPSERSVSSSPAPNWLNSPGSSSG 155
Query: 135 YIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEK 194
IVK+ +R+++PVD YPN+NFVGR+LGPRGNSLKRVEAST CRV IRG+GSIKD KE+
Sbjct: 156 LIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDM 215
Query: 195 LKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLREL 254
++GKPGYEHLN+PLHIL+EAELP I+D RL QA+EI+D+LL PV+E+ D+YK+QQLREL
Sbjct: 216 MRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLREL 275
Query: 255 AMLNSTLRED-SPHPGSVSPFSNGGMKRAK 283
A+LN +LRE+ SP GS+SP+++ GMKRAK
Sbjct: 276 ALLNGSLREEGSPMSGSISPYNSLGMKRAK 305
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 173/255 (67%), Gaps = 8/255 (3%)
Query: 30 QYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRVSSMVNDHGFNDFDXXXXXXXXXXXXX 89
+YLSELLAE HKL PF+ VLP RLLNQEI+RV++++ +
Sbjct: 64 KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGI 123
Query: 90 XXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSMDWQGAPPSHGSYIVKKIVRMEVPVDA 149
NG+ + ER +W +P S I K+ +R+++PVD
Sbjct: 124 FQNARADMNGWA--SQFPSER-----SVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDN 176
Query: 150 YPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKPGYEHLNDPLH 209
YPNFNFVGR+LGPRGNSLKRVEAST CRV IRG+GSIKD KEE ++GKPGYEHLN+PLH
Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLH 236
Query: 210 ILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNSTLRED-SPHP 268
IL+EAELP I+D RL QA+EI+D+LL P++E+ D YK+QQLRELA+LN TLRE+ SP
Sbjct: 237 ILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMS 296
Query: 269 GSVSPFSNGGMKRAK 283
GSVSP+++ GMKRAK
Sbjct: 297 GSVSPYNSLGMKRAK 311
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 177/287 (61%), Gaps = 23/287 (8%)
Query: 6 YNHQGF--SPARTLSPQIRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRV 63
Y GF SP R+ P P +YL+ELL E KLGPF+QV+P C RLLN EI RV
Sbjct: 23 YPLSGFRASPNRSPCP-----PSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRV 77
Query: 64 SSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSM 123
SS F D D L G+ L + +
Sbjct: 78 SS------FPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPV 131
Query: 124 DWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGK 183
W G P IVKK++R++VPVD YP++NFVGRILGPRGNSLKRVE +T CRVFIRG+
Sbjct: 132 GWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGR 191
Query: 184 GSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQ 243
GS+KD KEEKLKGKPGYEHL +PLH+LIEAELP +II++RL A ++ LLKP+DES
Sbjct: 192 GSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESM 251
Query: 244 DYYKRQQLRELAMLNSTLREDSPHPG-------SVSPFSNGGMKRAK 283
D+YKR+QL+ELA LN TLRE+SP P S+SPF++ KRAK
Sbjct: 252 DHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAK 295
>AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805
Length = 804
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 84/125 (67%), Gaps = 10/125 (8%)
Query: 142 RMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEK--LKGKP 199
++ +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ ++K LK P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 200 GYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNS 259
N+ LH+L+EAE L A ++++LL+PVDE + +KRQQLRELA LN
Sbjct: 304 SE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 260 TLRED 264
T+R++
Sbjct: 356 TIRDE 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,256,472
Number of extensions: 251377
Number of successful extensions: 583
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)