BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0211800 Os07g0211800|AK065959
         (356 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19050.1  | chr5:6369307-6371726 FORWARD LENGTH=362            474   e-134

>AT5G19050.1 | chr5:6369307-6371726 FORWARD LENGTH=362
          Length = 361

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 221/286 (77%), Positives = 255/286 (89%)

Query: 71  RRQVQGALFKYGPKSAQVAFKTGDFNHQVIFIGGLTDGFLATDYLEPLSLALEVEKWSLV 130
           + Q +G LFKYGPKS QVAFKTG++  QVIFIGGLTDG LATDYLEPL++AL+ EKWSLV
Sbjct: 76  KNQFRGVLFKYGPKSIQVAFKTGEYKQQVIFIGGLTDGLLATDYLEPLAIALDKEKWSLV 135

Query: 131 QPLLSSSYTGYGISSLEQDALELDQLISYLINKENSDGVILLGHSTGCQDIVHYMRTNFA 190
           Q L+SSSY+G+G SSL+QDA E+DQLI++LINKENS+GV+LLGHSTGCQDIV+YM TN A
Sbjct: 136 QLLMSSSYSGFGTSSLKQDAQEIDQLINHLINKENSEGVVLLGHSTGCQDIVYYMGTNAA 195

Query: 191 CSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMDLMPREANPDAPITAYR 250
           CS+AV   ILQAPVSDREY+ATLPET  MIDLAA M+ EGRG +LMPREA+P API+AYR
Sbjct: 196 CSRAVRAAILQAPVSDREYKATLPETPAMIDLAANMIKEGRGEELMPREADPCAPISAYR 255

Query: 251 YHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLC 310
           YHSLCAYMGDDDMFSSDLS+DQL+ RLGHM+ T CQVIFSMGDEYVP+YVDK+ALV+RL 
Sbjct: 256 YHSLCAYMGDDDMFSSDLSDDQLKTRLGHMANTPCQVIFSMGDEYVPDYVDKKALVNRLS 315

Query: 311 RALGNAEKVEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPWS 356
           +A+G AEKVEIE GNH+LSNRV EAV+AI+ FVKREGP GWDDPWS
Sbjct: 316 KAMGGAEKVEIEHGNHSLSNRVHEAVQAIIGFVKREGPSGWDDPWS 361



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,941,928
Number of extensions: 269363
Number of successful extensions: 592
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)