BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0209000 Os07g0209000|AK059111
         (439 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66680.1  | chr5:26617840-26620581 REVERSE LENGTH=438          661   0.0  

>AT5G66680.1 | chr5:26617840-26620581 REVERSE LENGTH=438
          Length = 437

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/395 (77%), Positives = 357/395 (90%)

Query: 45  RSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPSTPRFGGSVDQNSI 104
           +SSHS FF +L+ RGFDLDF+LA+D KL+L RYGQYLYDGL++FAPST RFGGS+D  SI
Sbjct: 43  KSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPSTERFGGSLDSKSI 102

Query: 105 LEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAATDAEGDHTLIA 164
            +F+D+G D+IL+AD++ASDLIRGIATECGVDFDED  AMVIDH +++ +D +GDHTLIA
Sbjct: 103 ADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSFSVSDVDGDHTLIA 162

Query: 165 GDDLIQSDVILGSKKIEAPVLFRGIGHAVNPSNSLVLKVLSASPSAYSANPKSKLASPPS 224
            DDL++SDVILG  KIEAPVLFRG+ H++NP+N+LVLKVLSASPSAYSANP SKL+SPP 
Sbjct: 163 ADDLVKSDVILGKTKIEAPVLFRGVAHSLNPTNNLVLKVLSASPSAYSANPSSKLSSPPQ 222

Query: 225 LTGSAISLVSVMQARNNARVLISGSLDLFSNRFLKSGVQKAGSKIRHEKAGNEQFVTETS 284
           LTGS+ISLVSVMQARNNARV+ISGS+ LFS+R ++SGVQKAGS  ++EK+GNEQFVTE S
Sbjct: 223 LTGSSISLVSVMQARNNARVVISGSVQLFSDRLIRSGVQKAGSPNQYEKSGNEQFVTELS 282

Query: 285 KWVFHERGHLKAVNVKHNKVGETNEPGMYRINDDLEYSVEIYEWSGTSWKPYVADDVQVQ 344
           KWVFHERGHLKA N+ H++VGET+EP +YRI DDLE+SVEIYEWSG SW+PYVA+DVQVQ
Sbjct: 283 KWVFHERGHLKAGNLVHHRVGETDEPAIYRIKDDLEFSVEIYEWSGKSWEPYVANDVQVQ 342

Query: 345 FYMMSPYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVEYQRLGYTGLSLSKQIPVRPYRH 404
           FYMMSPYVLKTLSTDKKG+F TSFKVPDVYGVFQFKVEY++LGYT LSLSKQIPVRPYRH
Sbjct: 343 FYMMSPYVLKTLSTDKKGLFHTSFKVPDVYGVFQFKVEYEKLGYTTLSLSKQIPVRPYRH 402

Query: 405 NEYERFITSAYPYYAASFSTMGAFFIFSFVYLYHK 439
           NEYERFI +AYPYY A F+TM  FF+FSFVYLYHK
Sbjct: 403 NEYERFIPTAYPYYGACFTTMAGFFVFSFVYLYHK 437



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,612,087
Number of extensions: 363430
Number of successful extensions: 1156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,310,137
Effective search space: 2800516169
Effective search space used: 2800516169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)