BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0206900 Os07g0206900|AK107761
(84 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08030.1 | chr3:2564191-2565819 FORWARD LENGTH=366 50 2e-07
AT5G11420.1 | chr5:3644655-3646991 FORWARD LENGTH=367 50 3e-07
AT1G29980.1 | chr1:10503411-10505994 REVERSE LENGTH=408 49 4e-07
AT2G34510.1 | chr2:14544114-14546732 REVERSE LENGTH=402 49 5e-07
AT5G25460.1 | chr5:8863430-8865394 FORWARD LENGTH=370 49 6e-07
AT2G41800.1 | chr2:17436671-17438005 REVERSE LENGTH=371 47 1e-06
AT4G32460.1 | chr4:15663036-15664859 REVERSE LENGTH=366 47 1e-06
>AT3G08030.1 | chr3:2564191-2565819 FORWARD LENGTH=366
Length = 365
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 35 RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
+ AS +F A R R+TF+S +YHT D VS CGPV+D++ V
Sbjct: 319 KTASFKFKAVEARTRITFFSGFYHTKKTDTVSLCGPVIDEIVV 361
>AT5G11420.1 | chr5:3644655-3646991 FORWARD LENGTH=367
Length = 366
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 35 RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
++ASLRFVA R RV FYS++Y + D S CGPV+D VK+
Sbjct: 318 KRASLRFVAVSTRTRVMFYSTFYSMRSDDFSSLCGPVIDDVKL 360
>AT1G29980.1 | chr1:10503411-10505994 REVERSE LENGTH=408
Length = 407
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 36 QASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
+A L F A R RV FYS YY+T D S CGPV+D V+V
Sbjct: 341 KAGLNFTAKADRTRVAFYSVYYNTRTDDMSSLCGPVIDDVRV 382
>AT2G34510.1 | chr2:14544114-14546732 REVERSE LENGTH=402
Length = 401
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 36 QASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
++ L F A R R+ FYS YY+T D S CGPV+D VKV
Sbjct: 337 RSELNFTAKAERTRIAFYSIYYNTRTDDMTSLCGPVIDDVKV 378
>AT5G25460.1 | chr5:8863430-8865394 FORWARD LENGTH=370
Length = 369
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 35 RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
++AS+RFVA R+R+ FYS++Y + D S CGPV+D VK+
Sbjct: 321 KRASIRFVAVSTRSRIMFYSTFYAMRSDDFSSLCGPVIDDVKL 363
>AT2G41800.1 | chr2:17436671-17438005 REVERSE LENGTH=371
Length = 370
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 35 RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
+ RFVA R R+TFYS++YHT D CGPVLD V V
Sbjct: 324 KTGHFRFVADSDRTRLTFYSAFYHTKLHDFGHLCGPVLDSVVV 366
>AT4G32460.1 | chr4:15663036-15664859 REVERSE LENGTH=366
Length = 365
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 35 RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKV 77
+++SLRFVA R RV FYS++Y D S CGPV+D VK+
Sbjct: 317 KRSSLRFVAVSSRTRVMFYSTFYAMRNDDFSSLCGPVIDDVKL 359
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 953,819
Number of extensions: 23154
Number of successful extensions: 54
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)