BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0205000 Os07g0205000|AK072032
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32470.1  | chr4:15669641-15671095 REVERSE LENGTH=123          167   3e-42
AT5G25450.1  | chr5:8857036-8857849 FORWARD LENGTH=123            161   1e-40

>AT4G32470.1 | chr4:15669641-15671095 REVERSE LENGTH=123
          Length = 122

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 96/122 (78%)

Query: 54  LSSLSAWLVNPRRNPLARLHMNAVASRLRKYGXXXXXXXXXXXXXXIKEALARLPREVVD 113
           ++SL    ++P++N LAR+HM A+++RLR+YG              IKEA+ RLPREVVD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 114 ARNQRLKRAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPLYQRT 173
           ARNQRLKRAMDLSMKH+YLP D QA QTPFRGYL DMLALV++ES EREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPLYQRT 120

Query: 174 IP 175
           +P
Sbjct: 121 LP 122



>AT5G25450.1 | chr5:8857036-8857849 FORWARD LENGTH=123
          Length = 122

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 94/122 (77%)

Query: 54  LSSLSAWLVNPRRNPLARLHMNAVASRLRKYGXXXXXXXXXXXXXXIKEALARLPREVVD 113
           ++S    LV+PR+N LAR+HM +V++RLR+YG              IKEAL RLPRE+VD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 114 ARNQRLKRAMDLSMKHQYLPADAQAKQTPFRGYLSDMLALVKKESAEREALGALPLYQRT 173
           ARNQRL RAMDLSMKH+YLP + QA QTPFR YL DMLALVK+E AEREALGALPLYQRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query: 174 IP 175
           IP
Sbjct: 121 IP 122



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,862,201
Number of extensions: 82697
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)