BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0196300 Os07g0196300|AK101511
         (404 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47765.1  | chr1:17574906-17576092 REVERSE LENGTH=386           50   2e-06
AT3G22700.1  | chr3:8024798-8025814 REVERSE LENGTH=339             50   3e-06

>AT1G47765.1 | chr1:17574906-17576092 REVERSE LENGTH=386
          Length = 385

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 24 LPLDALFEIMLRLPARDVCRLRAVCRSWRAVASDRAFVDAHASRHPGPYVAACF 77
          LPLD   EI+LRLP + + R R V + W ++ +D  F++   +R P P +  CF
Sbjct: 26 LPLDLTSEILLRLPEKSIARFRCVSKLWLSITTDPYFINLFETRSPRPSLLVCF 79



>AT3G22700.1 | chr3:8024798-8025814 REVERSE LENGTH=339
          Length = 338

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 24 LPLDALFEIMLRLPARDVCRLRAVCRSWRAVASDRAFVDAHASRHPG 70
          LPLD + EI+ R+PA  + RLR+ CR W A+  DR F + H  + P 
Sbjct: 4  LPLDLVEEILSRVPATSLKRLRSTCRQWNALLKDRRFTEKHFRKAPK 50



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,092,437
Number of extensions: 316898
Number of successful extensions: 954
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)