BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0189700 Os07g0189700|AK099833
         (225 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14100.1  | chr4:8120749-8122288 FORWARD LENGTH=207            181   4e-46
AT3G23760.1  | chr3:8562965-8564640 REVERSE LENGTH=195            176   7e-45

>AT4G14100.1 | chr4:8120749-8122288 FORWARD LENGTH=207
          Length = 206

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 116/165 (70%), Gaps = 8/165 (4%)

Query: 30  QFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFF--- 86
           QFHA++F N +G    L +IDL+YDW  GRN N+I+ QL G  TYD+EW NGTS+F+   
Sbjct: 36  QFHALMFMNYSGD---LSMIDLWYDWTNGRNFNIIQEQLGG-ITYDLEWNNGTSFFYTLD 91

Query: 87  NATSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRW 146
            + SCR+    VG+L P+WL  GA YLG++ V+GF C++W KVD +WYYEDV T RPV+W
Sbjct: 92  ESKSCRSGQLEVGILRPNWLD-GAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKRPVQW 150

Query: 147 NFFNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQHTVIADPGAAT 191
            F+ G + H+M++EVG VLED KWQAP  CF+ +   ++  GA +
Sbjct: 151 IFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKEKKSLSTKGALS 195



>AT3G23760.1 | chr3:8562965-8564640 REVERSE LENGTH=195
          Length = 194

 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 8/155 (5%)

Query: 29  EQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFFN- 87
           EQFHA++  N +GS   L+++DL+YDW  GRN N+I+ QL G  TYD+EW NGTS+++  
Sbjct: 40  EQFHALMLMNKSGS---LEIVDLWYDWVNGRNFNIIQKQL-GKLTYDLEWNNGTSFYYTL 95

Query: 88  --ATSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVR 145
             + +CRT  F VG+L P+WL  GA Y+G+  V GF C++W KV+ +WYYEDVVT RPV+
Sbjct: 96  DASKTCRTVHFEVGILRPNWLD-GAKYMGQRHVNGFLCNVWEKVEFLWYYEDVVTKRPVQ 154

Query: 146 WNFFNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQ 180
           W F+ G + HVM+FEVG VLED KWQAP  CF ++
Sbjct: 155 WIFYTGREAHVMTFEVGAVLEDEKWQAPVYCFHNE 189



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,738,674
Number of extensions: 203125
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)