BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0187200 Os07g0187200|AK065328
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36400.1  | chr4:17197265-17200472 FORWARD LENGTH=560          138   5e-34
AT5G06580.1  | chr5:2011486-2016473 REVERSE LENGTH=568             54   2e-08

>AT4G36400.1 | chr4:17197265-17200472 FORWARD LENGTH=560
          Length = 559

 Score =  138 bits (348), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/72 (88%), Positives = 67/72 (93%)

Query: 35  FIMPLDLGAKGSCHIGGNISTNAGGLRFIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKD 94
           FIMPLDLGAKGSCHIGGN+STNAGGLR IRYGSLHG+VLGLE V A+G VLDML TLRKD
Sbjct: 220 FIMPLDLGAKGSCHIGGNVSTNAGGLRLIRYGSLHGTVLGLEAVTANGNVLDMLGTLRKD 279

Query: 95  NTGYDLKHLFIG 106
           NTGYDLKHLFIG
Sbjct: 280 NTGYDLKHLFIG 291



>AT5G06580.1 | chr5:2011486-2016473 REVERSE LENGTH=568
          Length = 567

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 30  YHLFRFIMPLDLGAKGSCHIGGNISTNAGGLRFIRYGSLHGSVLGLEVVLADGTVLDMLT 89
           Y LF    PLD G   S  IGG  +T   G   +RYG++  +V+ L+VVL +G V+   +
Sbjct: 230 YGLF---FPLDPGPGAS--IGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTAS 284

Query: 90  TLRKDNTGYDLKHLFIG 106
             RK   GYDL  L IG
Sbjct: 285 RARKSAAGYDLTRLIIG 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.150    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,360,714
Number of extensions: 89861
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)