BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0179500 Os07g0179500|Os07g0179500
         (300 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32440.2  | chr4:15657295-15659354 FORWARD LENGTH=394           49   3e-06

>AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394
          Length = 393

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 48/293 (16%)

Query: 21  RWVLGDITEVLDRNSWRLGKIAKVLKDDYFVIRVTGCMQMREFHISCLRFPHAYHGKQSA 80
           RW  G++ EVLD  SW+   + + L   Y+V+R+ G  +   FH   LR   ++  ++  
Sbjct: 70  RWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLRARKSWQDERWV 129

Query: 81  VIDKVR---KQSEKQTQHVDQTF--HHSKMVMEDDHHSNEANDHITKRHKAINL--CPSS 133
            I K+    K S      V Q    H + M +   H  +  +  + KR    N   C  S
Sbjct: 130 AIGKISGSLKSSTLTGSDVHQKLQPHRNSMPL---HEPSVVSARLLKRPSPYNWSECAES 186

Query: 134 SARNVKKKLELTRMPPDDSIPGASKKRRVDAHEVHRQTRKPQPLKVSAKNDIHRDLFCRP 193
              N KK   L +           ++++VDA     + R  +   V A  + H+  +C+ 
Sbjct: 187 CTGNPKKMRSLEK---------EGQQQKVDAISCRPENRGGKS-HVQASLNNHKTGYCQI 236

Query: 194 SSERYNDLAKNNLTKRKPDSIVRPPSQMPLQVREENECSVASCSVNFSEHS------MNT 247
              R    +++       DS V               CSV SCS    + S      ++ 
Sbjct: 237 VRVRSKGFSESVRADDCSDSDV---------------CSVGSCSATSYDESNMPPCMLDG 281

Query: 248 DTQSVGVRNSFPDDAMSSCPSMLRQESDNVHGC--DFKMDVHELELQAYQSTI 298
            TQ     +S   DA SSC   L +E    H    D   +    EL +Y+ST+
Sbjct: 282 STQQA---DSCSSDAESSCG--LGEEPRWKHSSVGDGARNSCRSELYSYRSTL 329



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,884,208
Number of extensions: 287166
Number of successful extensions: 885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)