BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0164600 Os07g0164600|AK107727
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19910.2  | chr5:6731484-6732821 REVERSE LENGTH=227            182   8e-47

>AT5G19910.2 | chr5:6731484-6732821 REVERSE LENGTH=227
          Length = 226

 Score =  182 bits (463), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 99/131 (75%), Gaps = 30/131 (22%)

Query: 18  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFF 77
           QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYL+YWQRPEYIK+IMYPHCL+F
Sbjct: 30  QRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYF 89

Query: 78  LELLQNANFRNAMAHPASK------------------------------EVAHRQQYFFW 107
           LELLQN NFR AMAHPA+K                              E+AHRQQ+++W
Sbjct: 90  LELLQNPNFRTAMAHPANKWFKMLGYWCFWNVFWGLVEFRVSLVQNLAYELAHRQQFYYW 149

Query: 108 KNYRNNRLKHI 118
           KNYRNNRLKHI
Sbjct: 150 KNYRNNRLKHI 160



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,121,654
Number of extensions: 99925
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)