BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0152800 Os07g0152800|AK065458
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07560.1  | chr3:2411616-2413310 REVERSE LENGTH=305            137   7e-33

>AT3G07560.1 | chr3:2411616-2413310 REVERSE LENGTH=305
          Length = 304

 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 166 QDPNS-FGXXXXXXSVWVSFLRVMHGVVNFFGRVAFLVEQNTQAFYLFITAMLQLFDRSG 224
           QDPN  F         W+SFLRVM G VNFFGRVA L++QNTQAF++F++A+LQLFDR G
Sbjct: 179 QDPNDPFNQPPSPPGFWISFLRVMQGAVNFFGRVAMLIDQNTQAFHMFMSALLQLFDRGG 238

Query: 225 MLYGELARFVLRMLGIRTKSKKGKV--QGPD---TPAFEGPAQQFIEAPK-----GNNSW 274
           MLYGELARFVLRMLG+RT+ +K +   QGP+    P      Q ++E PK     G   W
Sbjct: 239 MLYGELARFVLRMLGVRTRPRKMQQPPQGPNGLPLPHQPHGNQNYLEGPKTAAPGGGGGW 298

Query: 275 DNVWGN 280
           DNVWGN
Sbjct: 299 DNVWGN 304




 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 5/74 (6%)

Query: 2  AGSPPKPWERAGAEGTSGPAPFKPPSGGTTSDVVEASGTAKPGETV--TATERNLSANVN 59
           GSPPKPWE+ G   TSGP PF+PPS  +T+  VEASGTA PGE V       N +AN+N
Sbjct: 7  GGSPPKPWEKEG--NTSGPNPFRPPSNTSTAGSVEASGTANPGEVVPPPVNRPNTAANMN 64

Query: 60 NPVSRPMPQRPWQQ 73
          + +SRP+P RPW+Q
Sbjct: 65 S-LSRPVPARPWEQ 77



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,288,101
Number of extensions: 148975
Number of successful extensions: 479
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)