BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0148900 Os07g0148900|AK058788
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30380.1  | chr1:10722325-10723013 FORWARD LENGTH=131          172   6e-44
AT1G55670.1  | chr1:20802874-20803356 REVERSE LENGTH=161           45   9e-06

>AT1G30380.1 | chr1:10722325-10723013 FORWARD LENGTH=131
          Length = 130

 Score =  172 bits (435), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 105/124 (84%), Gaps = 4/124 (3%)

Query: 9   TSVPQFHGLRTY---SSP-RSMVTLPSLRMSKKRSQGIRCDYIGSATNVIMVTTTTLMLF 64
           T++PQF+GLR     ++P + + ++  +R     + G +CD+IGS+TN+IMVT+TTLMLF
Sbjct: 7   TTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLF 66

Query: 65  AGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKN 124
           AGRFGLAPSANRK+TAGL+LEARDSGLQTGDPAGFTLADTLACG VGHI+GVGVVLGLKN
Sbjct: 67  AGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKN 126

Query: 125 IGVL 128
           IG +
Sbjct: 127 IGAI 130



>AT1G55670.1 | chr1:20802874-20803356 REVERSE LENGTH=161
          Length = 160

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 30/128 (23%)

Query: 14  FHGLRTYSSPRSMVTLPSLRMSKKRSQG--IRCDYIGSATNVIMVTTTTLMLFAGRF--- 68
           FHGLR      S   LP L  + ++S    +R +    + ++++  +T L LF GRF   
Sbjct: 28  FHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAEL---SPSIVISLSTGLSLFLGRFVFF 84

Query: 69  ----------GLAPSANRKSTAGLKLEARD-------SGLQTGDPAGFTLADTLACGAVG 111
                     GL P  N K+      EA D       S L++ DP GF + D LA G++G
Sbjct: 85  NFQRENVAKQGL-PEQNGKT----HFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIG 139

Query: 112 HIMGVGVV 119
           HI+   ++
Sbjct: 140 HIVAYYIL 147



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,498,010
Number of extensions: 86936
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)