BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0148800 Os07g0148800|AK062246
(376 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34680.1 | chr2:14616947-14628300 REVERSE LENGTH=1709 550 e-157
>AT2G34680.1 | chr2:14616947-14628300 REVERSE LENGTH=1709
Length = 1708
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/374 (70%), Positives = 313/374 (83%)
Query: 2 YEVTDADYSRRLLFGYIPVRSDGIIGEERLSEPSDIILPERLKIEALSFKGNQVERETLT 61
YEVT++DY+ R+LFGY PVRSD ++GE ++SEP++IILPE K++ L+F G V+ + LT
Sbjct: 1334 YEVTESDYNCRILFGYTPVRSDSVVGELKMSEPTEIILPEVPKVDMLAFTGKAVQGDVLT 1393
Query: 62 VLEQIPSTAVQQHLWSNYKKEITYQWFASSGSEVDQTFEPLANQCSRSYKVRFEDIGRCL 121
++ IP T +QQ +WS YK +I YQWF S S ++E L+++ S SYKVRFEDIGRCL
Sbjct: 1394 AVQVIPKTEIQQLVWSKYKGDIQYQWFRSPESGDKISYEALSSEISCSYKVRFEDIGRCL 1453
Query: 122 KCECSVSDVFGRSSELISIVTAPILPGKPKIEKLEIEGRGFHTNLYAVRGTYSGGKEGKS 181
KCEC V DVFGRSSEL T PI PG P+IEKLEIEG+GFHTNLYAVRG Y GGKEGKS
Sbjct: 1454 KCECVVHDVFGRSSELAYAETDPISPGFPRIEKLEIEGQGFHTNLYAVRGNYFGGKEGKS 1513
Query: 182 KIQWLRSMVGSPDLISIPGEIGRTYEANVDDVGYRLVIIYTPVREDGVEGQPISASTEPI 241
KIQWLRSMVGSPDLISIPGE GR YEANVDDVGYRLV++YTP+REDGV+G P+SASTEP+
Sbjct: 1514 KIQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVVVYTPIREDGVQGHPVSASTEPV 1573
Query: 242 AVEPEIYKEVKQKLDDGSVKFEVLCDKDRTPKKAQVMGHLERRILEVNRKRIKVVKPGSK 301
AVEP+I KEV+QKL+ G VKFEVLCDKD PKK G+LERR+LE+NRKRIKVVKPGSK
Sbjct: 1574 AVEPDILKEVRQKLETGLVKFEVLCDKDPYPKKIVGEGNLERRMLEMNRKRIKVVKPGSK 1633
Query: 302 ASFPTTEVRGTYVPPFHVELYRNDQHRFKIVVDGESEVDLMVQTRHMRDVIILVIRGLAQ 361
SF TTEVRG+Y PPFHVE +RNDQ R +IVVD E+EVD++VQ+RH+RDVI+LVIRG AQ
Sbjct: 1634 TSFATTEVRGSYGPPFHVETFRNDQRRLRIVVDSENEVDIVVQSRHLRDVIVLVIRGFAQ 1693
Query: 362 KFNSTSLNSLLKIE 375
+FNSTSLNSLLKI+
Sbjct: 1694 RFNSTSLNSLLKID 1707
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 16/242 (6%)
Query: 2 YEVTDADYSRRLLFGYIPVRSDGIIGEERLSEPSDIILPERLKIEALSFKGNQVERETLT 61
Y +T + + F IPVR DGI+GE R + + P +L G VE L+
Sbjct: 946 YTITKEAIGKFISFQCIPVRDDGIVGEPRSCMSQERVRPGNPSTVSLHVVGALVEGTMLS 1005
Query: 62 VLEQIPSTAVQQHLWSNYKKEITYQWFASSGSEVDQTFEPLANQCSRSYKVRFEDIGRCL 121
++ W + ++WF ++ D T + + SY + DIG +
Sbjct: 1006 A---------EKEYWGGEEGASVFRWFRTNS---DGTPCEIKGATTSSYLLSVGDIGYFI 1053
Query: 122 KCECS-VSDVFGRSSELISIVTAPILPGKPKIEKLEIEGRGFHTNLYAVRGTYSGGKEGK 180
V + R IS + PI+ G P + LE G + +Y+GG +G
Sbjct: 1054 SVSYEPVRNDRARGPTAISEIAGPIVAGHPNCQSLEFLGSMIEGQRLSFVASYTGGMKGN 1113
Query: 181 SKIQWLRSMVGSPDLISIPGEIGRTYEANVDDVGYRLVIIYTPVREDGVEGQPISASTEP 240
++W+R I E + ++DDVG + +IYTPVREDG+EG P S T+
Sbjct: 1114 CYLEWVRVKNNGVKEILSSDEF---LDLSLDDVGESIELIYTPVREDGIEGSPRSIRTDG 1170
Query: 241 IA 242
IA
Sbjct: 1171 IA 1172
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 119/265 (44%), Gaps = 23/265 (8%)
Query: 17 YIPVRSDGIIGEERLSEPSDIILPER-----LKIEALSFKGNQVERETLTVLEQIPSTAV 71
Y PVR DGI G R S +D I P L I K V +T + V
Sbjct: 1151 YTPVREDGIEGSPR-SIRTDGIAPANPMGLELLIPDCCEKQEVVPHKTYFGGHE----GV 1205
Query: 72 QQHLWSNYKKEITYQWFASSGSEVDQTFEPLANQC-SRSYKVRFEDIGRCLKCECSVSDV 130
+++W Y+ ++ + S+ +E+ E + C + Y ED+G L + V
Sbjct: 1206 GEYIW--YRTKV--KLHGSALTEISYAGEEVVVCCRTLKYTPSLEDVGAYLVLYWIPTRV 1261
Query: 131 FGRSSELISIVT-APILPGKPKIEKLEIEGRGFHTNLYAVRGTYSGGKEGKSKIQWLRSM 189
GRS + + ++T +P+ P P++ + + + ++ Y+ G Y GG EG S W R
Sbjct: 1262 DGRSGKPVVVITNSPVAPADPEVSNVRV--KKLFSDAYSGEGEYFGGHEGPSLFSWYREN 1319
Query: 190 VGSPDLISIPGEIGRTYEANVDDVGYRLVIIYTPVREDGVEGQ-PISASTEPIAVEPEIY 248
G+ DLI G +TYE D R++ YTPVR D V G+ +S TE I PE+
Sbjct: 1320 DGTIDLID--GANSKTYEVTESDYNCRILFGYTPVRSDSVVGELKMSEPTEIIL--PEVP 1375
Query: 249 KEVKQKLDDGSVKFEVLCDKDRTPK 273
K +V+ +VL PK
Sbjct: 1376 KVDMLAFTGKAVQGDVLTAVQVIPK 1400
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 63 LEQIPSTAVQQHLWSNYKKEITYQWFASSGSEVDQTFEPLANQCSRSYKVRFEDIGRCLK 122
L Q TA Q L + +QW + S + F P+ N Y + EDIG+ LK
Sbjct: 514 LFQESPTATDQEL------ALKFQWSVADRSLSN--FVPILNATKEVYWPKREDIGKILK 565
Query: 123 CECSVSDVFGRSSELISIVTAPILPGK--PKIEKLEIEGRGFHTNLYAVRG--TYSGGKE 178
EC+ + +I ++P+ GK PK+ LE+ G N+ + + GG
Sbjct: 566 IECTPVMAETEYPSIFAI-SSPVQRGKGIPKVVSLELNGELVEGNIIKGQAVVAWCGGTP 624
Query: 179 GKSKIQWLR-SMVGSPDLISIPGEIGRTYEANVDDVGYRLVIIYTPVREDGVEGQPISAS 237
GK WLR GSP + I G Y ++DDVG +V +YTPV E G G+P
Sbjct: 625 GKCITSWLRRKWNGSP--VVIDGAEDEEYMLSLDDVGSSMVFMYTPVTEGGARGEPQYKY 682
Query: 238 TEPIAVEPEIYKEVK 252
TE + P V+
Sbjct: 683 TEFVKAAPPSVSNVR 697
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 150 PKIEKLEIEGRGFHTNLYAVRGTYSGGKEGKSKIQWLRSMVGSPDLISIPGEIGRTYEAN 209
P + + I G + G Y GGKEG SK +WLR + +L I Y
Sbjct: 691 PSVSNVRITGDAVEGCVLKGVGDYFGGKEGPSKFEWLRKNKETGELSLISAGTSE-YTLT 749
Query: 210 VDDVGYRLVIIYTPVREDGVEGQPISASTEPIAVEP 245
+DVG + +Y P +G+EG+P+S S+ + P
Sbjct: 750 QEDVGTHVTFVYIPANFEGLEGEPVSTSSSVVKPAP 785
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 22/247 (8%)
Query: 2 YEVTDADYSRRLLFGYIPVRSDGIIGEERLSEPSDIILPERLKIEALSFKGNQVERETLT 61
Y +T D + F YIP +G+ GE +S S ++ P K+ G+
Sbjct: 746 YTLTQEDVGTHVTFVYIPANFEGLEGEP-VSTSSSVVKPAPPKVTDAKIVGD-------- 796
Query: 62 VLEQIPSTAVQQHLWSNYKKEITYQWFASSGS--EVDQTFEPLA-NQCSRSYKVRFEDIG 118
L + V + + QWF SS S E D + E L+ ++ ++S+++ +G
Sbjct: 797 -LRENSKVTVTGTVTGGTEGSSRVQWFKSSCSILEGDNSLEELSTSKVAKSFRIPLGAVG 855
Query: 119 RCLKCECSVSDVFGRSSELISIVT---APILPGKPKIEKLEIEGRGFHTNLYAVRGTYSG 175
+ + + G E + +++ LP P + L I G + Y G
Sbjct: 856 YYIVAKYTPMTPDGECGEPVYVLSERAVETLP--PSLNFLSITGDNIEGGILTASYGYIG 913
Query: 176 GKEGKSKIQWLRSMVGSPDLIS--IPGEIG-RTYEANVDDVGYRLVIIYTPVREDGVEGQ 232
G EGKSK +W + DL IP G Y + +G + PVR+DG+ G+
Sbjct: 914 GHEGKSKYEWHYHKAEN-DLPGALIPEASGLLQYTITKEAIGKFISFQCIPVRDDGIVGE 972
Query: 233 PISASTE 239
P S ++
Sbjct: 973 PRSCMSQ 979
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,285,554
Number of extensions: 361954
Number of successful extensions: 917
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 276
Effective length of database: 8,364,969
Effective search space: 2308731444
Effective search space used: 2308731444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)