BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0120600 Os07g0120600|J065198L06
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 106 5e-24
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 93 4e-20
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 90 4e-19
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 75 1e-14
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 67 2e-12
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 62 1e-10
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 6 ESHRAGAEIVSGDGVSRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXX 65
E RA AE+ +GD + R+K+ DIEE GY++E+G +WL Q+
Sbjct: 6 EEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKSIT 65
Query: 66 XXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADASPEKVTFKT 125
+ VSY EVTA VE GK+KK+TGVK KELL+W+++ E+Y + P K+TFKT
Sbjct: 66 HKFTEID-KLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIY-TEEPPTKITFKT 123
Query: 126 GTGLSDTFDATAFALGE 142
T LS TF TAF + E
Sbjct: 124 PTTLSRTFPVTAFIVPE 140
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 9 RAGAEIVSGDGVSRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXXXXX 68
RA AE +GD + R+K+ DIEE GY++ETG +WL Q+
Sbjct: 9 RARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKF 68
Query: 69 XXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADA-SPEKVTFKTGT 127
+ VSYA EV A VE GK+KK+TGVK KELL+W+++ E+ + S K+ F+T T
Sbjct: 69 EAIG-KLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPT 127
Query: 128 GLSDTFDATAFALGE 142
GLS TF +AF + E
Sbjct: 128 GLSRTFPVSAFVVPE 142
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 1 MASQ--VESHRAGAEIVSGDGVSRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWL 58
M+SQ R GAEI +G+ ++K+ ++ E G+NK TG++W
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVW- 59
Query: 59 VQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADASP 118
++ + VSY EVTA +E ++ ++TG+K+KE+L+W+++ E++V P
Sbjct: 60 IKIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDP 119
Query: 119 EKVTFKTGTGLSDTFDATAF 138
++TF TGLS TF TAF
Sbjct: 120 TQITFANPTGLSRTFPVTAF 139
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MASQ----VESHRAGAEIVSGDGVSRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFM 56
MAS+ V R GAEIV G K+S+ ++ E G + TG++
Sbjct: 1 MASEGVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYV 60
Query: 57 WLVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADA 116
W+ Q + VSY EVTA+V+K +KK+TGVK+K++ LW+ +VE+ + +
Sbjct: 61 WMKQDTPYEHFFEATNTR-VSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEP 119
Query: 117 SPEKVTFKTGTGLSDTFDATAF 138
+K+ FKT G+ +F T F
Sbjct: 120 KSKKIYFKTPMGIGRSFPVTGF 141
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 6 ESHRAGAEIVSGDGVSRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXX 65
E+ +A AE+ GD R+K +I+E GY K+TGF+WL +
Sbjct: 4 EAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEKKK 63
Query: 66 XXXXXXXXQ-------TVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADASP 118
V + EVTA+ E ++KK+TGVK KE ++W+S+ E+ V + S
Sbjct: 64 EDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQV-NRSS 122
Query: 119 EKVTFKTGTGL 129
+TFKT GL
Sbjct: 123 GLITFKTEVGL 133
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 43 DIEEFGYNKETGFMWLVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKEL 102
D+ E GYNK GF+W+ R + V Y E+TAFVE +++++TGVK+KEL
Sbjct: 45 DMTEVGYNKTKGFVWMRMRSKIEHTFREIGRR-VLYDTEITAFVEDRRMRRLTGVKSKEL 103
Query: 103 LLWLSVVEVYV 113
++W+ V ++++
Sbjct: 104 MIWVPVNDIFI 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,282,179
Number of extensions: 66064
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 6
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 106 (45.4 bits)