BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0120500 Os07g0120500|Os07g0120500
(516 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 106 3e-23
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 98 1e-20
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 89 5e-18
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 79 5e-15
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 73 4e-13
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 62 9e-10
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 380 ESHRASAEIVNGDAICRKKSIXXXXXXXXXXXXXXXXDIEEFGYNRDTGFMWMVQRXXXX 439
E RA AE+ GD ICR+K+ DIEE GY+R++G +W+ Q+
Sbjct: 6 EEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKSIT 65
Query: 440 XXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVAEASPEKVTFKT 499
+ VSY EVTA VE GK+KK+TGVK KELL+W+++ E+Y E P K+TFKT
Sbjct: 66 HKFTEID-KLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYT-EEPPTKITFKT 123
Query: 500 GTGLSDNFDATAFALGE 516
T LS F TAF + E
Sbjct: 124 PTTLSRTFPVTAFIVPE 140
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 383 RASAEIVNGDAICRKKSIXXXXXXXXXXXXXXXXDIEEFGYNRDTGFMWMVQRXXXXXXX 442
RA AE GD ICR+K+ DIEE GY+R+TG +W+ Q+
Sbjct: 9 RARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKF 68
Query: 443 XXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVAE-ASPEKVTFKTGT 501
+ VSYA EV A VE GK+KK+TGVK KELL+W+++ E+ + + S K+ F+T T
Sbjct: 69 EAIG-KLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPT 127
Query: 502 GLSDNFDATAFALGE 516
GLS F +AF + E
Sbjct: 128 GLSRTFPVSAFVVPE 142
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 375 MASQ--IESHRASAEIVNGDAICRKKSIXXXXXXXXXXXXXXXXDIEEFGYNRDTGFMWM 432
M+SQ R AEI NG++ C++K+ ++ E G+N+ TG++W
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVW- 59
Query: 433 VQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVAEASP 492
++ + VSY EVTA +E ++ ++TG+K+KE+L+W+++ E++V P
Sbjct: 60 IKIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDP 119
Query: 493 EKVTFKTGTGLSDNFDATAF 512
++TF TGLS F TAF
Sbjct: 120 TQITFANPTGLSRTFPVTAF 139
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 79.0 bits (193), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 375 MASQ----IESHRASAEIVNGDAICRKKSIXXXXXXXXXXXXXXXXDIEEFGYNRDTGFM 430
MAS+ + R AEIV G C K+S+ ++ E G R TG++
Sbjct: 1 MASEGVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYV 60
Query: 431 WMVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVAEA 490
WM Q + VSY EVTA+V+K +KK+TGVK+K++ LW+ +VE+ + E
Sbjct: 61 WMKQDTPYEHFFEATNTR-VSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEP 119
Query: 491 SPEKVTFKTGTGLSDNFDATAF 512
+K+ FKT G+ +F T F
Sbjct: 120 KSKKIYFKTPMGIGRSFPVTGF 141
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 380 ESHRASAEIVNGDAICRKKSIXXXXXXXXXXXXXXXXDIEEFGYNRDTGFMWMVQRXXXX 439
E+ +A AE+ +GD CR+K +I+E GY +DTGF+W+ +
Sbjct: 4 EAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEKKK 63
Query: 440 XXXXXXXXQ-------TVSYAGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVAEASP 492
V + EVTA+ E ++KK+TGVK KE ++W+S+ E+ V +S
Sbjct: 64 EDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVNRSSG 123
Query: 493 EKVTFKTGTGL 503
+TFKT GL
Sbjct: 124 -LITFKTEVGL 133
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 417 DIEEFGYNRDTGFMWMVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKITGVKTKEL 476
D+ E GYN+ GF+WM R + V Y E+TAFVE +++++TGVK+KEL
Sbjct: 45 DMTEVGYNKTKGFVWMRMRSKIEHTFREIGRR-VLYDTEITAFVEDRRMRRLTGVKSKEL 103
Query: 477 LLWLSVVEVYV 487
++W+ V ++++
Sbjct: 104 MIWVPVNDIFI 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,728,928
Number of extensions: 423504
Number of successful extensions: 920
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 6
Length of query: 516
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 413
Effective length of database: 8,282,721
Effective search space: 3420763773
Effective search space used: 3420763773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)