BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0110300 Os07g0110300|AK073241
         (181 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21090.2  | chr4:11256663-11258269 REVERSE LENGTH=198          237   2e-63
AT4G05450.1  | chr4:2759048-2760634 FORWARD LENGTH=198            233   4e-62

>AT4G21090.2 | chr4:11256663-11258269 REVERSE LENGTH=198
          Length = 197

 Score =  237 bits (605), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 142/196 (72%), Gaps = 15/196 (7%)

Query: 1   MLSRISQLGARLLRE---NRAVGNLASSTTSYYRGQ-------LSRRFVPTKNILFST-- 48
           +  R+S+LG+R+++E    R +            GQ       L R+    K  LFS   
Sbjct: 2   VFHRLSRLGSRIVKELPRERHLSMCGKRILQRSYGQYLQSSPMLQRQTRSFKEALFSNNH 61

Query: 49  ---ATTSSDRDDGSQSKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGS 105
               + S+  + G +  EKI+VTFV+KDG E  I VPVGM+ILEAAHENDIELEGACEGS
Sbjct: 62  KFCTSFSTTSEKGGEKTEKINVTFVDKDGEEIHIKVPVGMNILEAAHENDIELEGACEGS 121

Query: 106 LACSTCHVIVMDVNYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALP 165
           LACSTCHVIVMD  YYNKLE+PTDEENDMLDLAFGLT TSRLGCQVIAKPELDG+RLA+P
Sbjct: 122 LACSTCHVIVMDTKYYNKLEEPTDEENDMLDLAFGLTATSRLGCQVIAKPELDGVRLAIP 181

Query: 166 AATRNFAVDGFVPKPH 181
           +ATRNFAVDGFVPKPH
Sbjct: 182 SATRNFAVDGFVPKPH 197



>AT4G05450.1 | chr4:2759048-2760634 FORWARD LENGTH=198
          Length = 197

 Score =  233 bits (594), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 119/194 (61%), Positives = 145/194 (74%), Gaps = 17/194 (8%)

Query: 4   RISQLGARLLRENRAVGNLASSTT-----SYYRGQLSRRFVP-----------TKNILFS 47
           RIS+LG+ ++++    G LA+  T     SY     S   VP            K+  F 
Sbjct: 5   RISRLGSTIVKQLAREGYLATYGTKNLHRSYGHYLQSLPVVPRQARTSQEAWFLKSHKFC 64

Query: 48  TATTSSDRDDGSQSKEKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEGACEGSLA 107
           T++T+S  ++G +  EKI++ FV+KDG E  + VP+GMS+LEAAHENDI+LEGACE SLA
Sbjct: 65  TSSTTSS-ENGDEETEKITIIFVDKDGEEIPVKVPIGMSVLEAAHENDIDLEGACEASLA 123

Query: 108 CSTCHVIVMDVNYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGMRLALPAA 167
           CSTCHVIVMD  YYNKLE+PTDEENDMLDLAFGLTETSRLGCQVIA+PELDG+RLA+P+A
Sbjct: 124 CSTCHVIVMDTEYYNKLEEPTDEENDMLDLAFGLTETSRLGCQVIARPELDGVRLAIPSA 183

Query: 168 TRNFAVDGFVPKPH 181
           TRNFAVDGFVPKPH
Sbjct: 184 TRNFAVDGFVPKPH 197



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,749,046
Number of extensions: 149366
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 89
Effective length of database: 8,584,297
Effective search space: 764002433
Effective search space used: 764002433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)