BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0102400 Os07g0102400|AK066373
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292 337 6e-93
AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304 277 5e-75
AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294 259 8e-70
>AT4G21790.1 | chr4:11569924-11572163 FORWARD LENGTH=292
Length = 291
Score = 337 bits (863), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 164/272 (60%), Positives = 191/272 (70%)
Query: 15 LRGFWEEVNESPAWQDGXXXXXXXXXXXXXXXXXIQLIRIQRRVPEFGWTTQKVFHLMNF 74
+ +W++VNES WQDG +QLIRIQ RVPE+GWTTQKVFHLMNF
Sbjct: 20 ITSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQLIRIQMRVPEYGWTTQKVFHLMNF 79
Query: 75 LVNGVRAXXXXXXXXXXXXSAKVYKXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLPTD 134
+VNGVRA K FFS YTLLVLFWAEIYHQARSLPTD
Sbjct: 80 VVNGVRAVLFGFHMQVFLVHPKALCWVLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTD 139
Query: 135 KLRIIYIAVNAIIYTIQVCIWVYLGINDNPLVELXXXXXXXXXXXXALLGFSVYGGRLFF 194
KLRI YI+VN +Y Q+ IW Y+ ++DN VEL A LGF +YGGRLFF
Sbjct: 140 KLRITYISVNVAVYLAQIGIWAYIWVHDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFF 199
Query: 195 LLRRFPIESKGRKKKLYEVGTVTAICCACFLIRCIVVAISAFDSDVSLEVLDHPILDFFY 254
+LRRFPIESKGR+KKL+EVG+VTAIC CFLIRC+VVA+SAFD D++L+VLDHP+L+ Y
Sbjct: 200 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIY 259
Query: 255 YMLTEILPSALVLFILRKLPPKRVSAQYHPIN 286
YM+ E+LPSALVLFILRKLPPKRVSAQYHPI
Sbjct: 260 YMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291
>AT2G02180.1 | chr2:560976-562961 FORWARD LENGTH=304
Length = 303
Score = 277 bits (708), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 173/269 (64%)
Query: 17 GFWEEVNESPAWQDGXXXXXXXXXXXXXXXXXIQLIRIQRRVPEFGWTTQKVFHLMNFLV 76
+W +VNESP WQD IQL+RIQ RVPE+GWTTQKVFH +NF+V
Sbjct: 34 NWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQLVRIQLRVPEYGWTTQKVFHFLNFVV 93
Query: 77 NGVRAXXXXXXXXXXXXSAKVYKXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLPTDKL 136
NGVRA ++ + FF+TY LLVLFWAEIY+QAR++ TD L
Sbjct: 94 NGVRAVVFVFRRNVQFMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGL 153
Query: 137 RIIYIAVNAIIYTIQVCIWVYLGINDNPLVELXXXXXXXXXXXXALLGFSVYGGRLFFLL 196
R + +NA++Y +Q+ +W+ L ++ + A LGF +YGGRLF +L
Sbjct: 154 RPSFFTINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFLML 213
Query: 197 RRFPIESKGRKKKLYEVGTVTAICCACFLIRCIVVAISAFDSDVSLEVLDHPILDFFYYM 256
+RFP+ESKGR+KKL EVG VT IC CFLIRCI++ +AFD +L+VLDHPIL+F YY+
Sbjct: 214 QRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYL 273
Query: 257 LTEILPSALVLFILRKLPPKRVSAQYHPI 285
L EILPS+LVLFILRKLPPKR QYH I
Sbjct: 274 LVEILPSSLVLFILRKLPPKRGITQYHQI 302
>AT1G14530.1 | chr1:4971420-4973597 REVERSE LENGTH=294
Length = 293
Score = 259 bits (663), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 172/271 (63%)
Query: 16 RGFWEEVNESPAWQDGXXXXXXXXXXXXXXXXXIQLIRIQRRVPEFGWTTQKVFHLMNFL 75
+ +W +VNESP WQD IQL+RIQ RVPE+GWTTQKVFH +NF+
Sbjct: 23 KNWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQLVRIQLRVPEYGWTTQKVFHFLNFM 82
Query: 76 VNGVRAXXXXXXXXXXXXSAKVYKXXXXXXXXXXFFSTYTLLVLFWAEIYHQARSLPTDK 135
VNGVRA ++ + FF+TY LLVLFWAEIY+QAR++ TD
Sbjct: 83 VNGVRALVFLFRRDAQNMQPEILQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDG 142
Query: 136 LRIIYIAVNAIIYTIQVCIWVYLGINDNPLVELXXXXXXXXXXXXALLGFSVYGGRLFFL 195
LR + +NA++Y IQ+ +W+ L L+ + A LGF +YGGRLF +
Sbjct: 143 LRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFLM 202
Query: 196 LRRFPIESKGRKKKLYEVGTVTAICCACFLIRCIVVAISAFDSDVSLEVLDHPILDFFYY 255
L+RFP+ESKGR+KKL EVG VT IC CFLIRCI++ AFD L+VLDHPIL+F YY
Sbjct: 203 LQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYY 262
Query: 256 MLTEILPSALVLFILRKLPPKRVSAQYHPIN 286
+L EILPS+LVLFILRKLPPKR QYH I
Sbjct: 263 LLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.145 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,669,232
Number of extensions: 148388
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)