BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0102000 Os07g0102000|AK070220
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20480.1  | chr3:7151497-7153369 REVERSE LENGTH=396            162   1e-40

>AT3G20480.1 | chr3:7151497-7153369 REVERSE LENGTH=396
          Length = 395

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 108/186 (58%), Gaps = 23/186 (12%)

Query: 1   MLRRRLSDTSAKIGVGPNRAAVATSMLRKYG-----------------------AQIGVA 37
           ML R L     KIGVG NRAA A   L KYG                        +IG  
Sbjct: 109 MLERHLRGGPVKIGVGANRAATAALFLDKYGCVDSSSLRSFFDLHERAQVWTISEKIGCI 168

Query: 38  ILDDGMQHLSLLRDVDIVMINALNPWGNKHLIPRGPMREPLTALTRAHILLIHHANLVSQ 97
           ILDDGMQH SL RD++IVM+N LNPWGN HL+P GP+REPL AL RA + ++HH +L+++
Sbjct: 169 ILDDGMQHWSLSRDLEIVMLNGLNPWGNGHLMPHGPLREPLLALERADVAVVHHVDLITK 228

Query: 98  PQLKTILSTVHDNGATCPVFFSKLVPSHIFQVNQPMHRLPLHVLHGIIVLCVSAIGCPDA 157
             L+ I + +     + P+F+SK+VP ++F V      + L  L    VLCVSAIG  DA
Sbjct: 229 QSLRDIENMIQGFKKSIPIFYSKMVPKYLFDVKNARSHVALEALRCASVLCVSAIGSADA 288

Query: 158 FIHSVQ 163
           F+ S++
Sbjct: 289 FVKSIE 294



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,049,981
Number of extensions: 158823
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)