BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0731100 Os06g0731100|J023139E13
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27980.1 | chr2:11913950-11919741 REVERSE LENGTH=1073 102 4e-23
AT2G37520.1 | chr2:15745033-15749615 REVERSE LENGTH=830 98 1e-21
AT3G53680.1 | chr3:19892863-19897412 REVERSE LENGTH=842 94 2e-20
AT2G36720.1 | chr2:15393447-15399189 FORWARD LENGTH=1008 78 1e-15
AT1G05380.1 | chr1:1577231-1582190 FORWARD LENGTH=1139 47 2e-06
AT3G14980.1 | chr3:5039931-5044811 REVERSE LENGTH=1190 47 2e-06
AT4G14920.1 | chr4:8531157-8535842 REVERSE LENGTH=1139 47 2e-06
AT5G63900.1 | chr5:25568698-25570371 FORWARD LENGTH=558 46 3e-06
>AT2G27980.1 | chr2:11913950-11919741 REVERSE LENGTH=1073
Length = 1072
Score = 102 bits (254), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
QGYFQ LF CIERLL L VKH VLPAADEA+SIWT +FGF K+T +E++EY K +
Sbjct: 987 QGYFQCLFACIERLLGFLNVKHIVLPAADEAKSIWTDKFGFTKMTDEEVKEYRKDYSVMI 1046
Query: 63 FQGTSTLHKLVP 74
F GTS L K VP
Sbjct: 1047 FHGTSMLRKSVP 1058
>AT2G37520.1 | chr2:15745033-15749615 REVERSE LENGTH=830
Length = 829
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
+GYFQ L+ C+E LL+SL V++ VLPAA+EAESIWT++FGF K++ +L+EY K + T+
Sbjct: 745 RGYFQGLYACVENLLSSLNVENLVLPAAEEAESIWTKKFGFTKMSDQQLQEYQKEVQLTI 804
Query: 63 FQGTSTLHKLVPK 75
F+GTS L K VPK
Sbjct: 805 FKGTSMLEKKVPK 817
>AT3G53680.1 | chr3:19892863-19897412 REVERSE LENGTH=842
Length = 841
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
+GYFQ LF C+E LL+SL V++ +LPAA+EAESIWT +FGF K+T+ L+ Y + + T+
Sbjct: 761 RGYFQGLFACVENLLSSLNVENLLLPAAEEAESIWTNKFGFTKMTEHRLQRYQREVQLTI 820
Query: 63 FQGTSTLHKLVPKL 76
F+GTS L K VP
Sbjct: 821 FKGTSMLEKKVPSF 834
>AT2G36720.1 | chr2:15393447-15399189 FORWARD LENGTH=1008
Length = 1007
Score = 77.8 bits (190), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 2 EQGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTT 61
E+GYFQ LF CIE+LL+SL V+ V+PAA+EAE +W +FGF K+ ++L +Y+K
Sbjct: 901 EKGYFQLLFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQM 960
Query: 62 V-FQGTSTLHKLV 73
V F+G S L K V
Sbjct: 961 VRFKGASMLQKPV 973
>AT1G05380.1 | chr1:1577231-1582190 FORWARD LENGTH=1139
Length = 1138
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
QG + LF IE + SLKV+ V+PA + WT FGF + D +R+ ++ T V
Sbjct: 856 QGMCRRLFDAIESAMRSLKVEKLVIPAIPDFLHAWTGNFGFTPL-DDSVRKEMRSLNTLV 914
Query: 63 FQGTSTLHK 71
F G L K
Sbjct: 915 FPGIDMLQK 923
>AT3G14980.1 | chr3:5039931-5044811 REVERSE LENGTH=1190
Length = 1189
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
QG + L IE +L SLKV+ V+ A WT+ FGF K DE R+ LK V
Sbjct: 954 QGMCRILVAAIEEMLMSLKVEKLVVAALPSLVETWTEGFGF-KPMDDEERDALKRINLMV 1012
Query: 63 FQGTSTLHK 71
F GT+ L K
Sbjct: 1013 FPGTTLLKK 1021
>AT4G14920.1 | chr4:8531157-8535842 REVERSE LENGTH=1139
Length = 1138
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 3 QGYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTV 62
QG + LF +E L LKVK ++PA + +W +FGF ++ +D L++ ++
Sbjct: 914 QGMCRRLFSVVESALQHLKVKLLIIPATADFSHVWISKFGFRQV-EDSLKKEMRSMNLLT 972
Query: 63 FQGTSTLHK--LVPK 75
F G L K L P+
Sbjct: 973 FPGIDVLQKELLAPR 987
>AT5G63900.1 | chr5:25568698-25570371 FORWARD LENGTH=558
Length = 557
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 4 GYFQALFGCIERLLASLKVKHFVLPAADEAESIWTQRFGFVKITQDELREYLKGGRTTVF 63
G + L +E+ ++ + V VLPAA E + WT+RFGF + E E +K G F
Sbjct: 472 GMCRVLMDELEKQMSQMGVCRLVLPAAKEVVTTWTERFGFSVMNSSERLELVKHGMLD-F 530
Query: 64 QGTSTLHKLVPK 75
GT HK + K
Sbjct: 531 VGTIMCHKFLQK 542
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,651,065
Number of extensions: 52794
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)