BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0727200 Os06g0727200|AK069446
(492 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35090.1 | chr4:16700937-16703215 REVERSE LENGTH=493 889 0.0
AT1G20630.1 | chr1:7146812-7149609 FORWARD LENGTH=493 863 0.0
AT1G20620.1 | chr1:7143142-7146193 FORWARD LENGTH=493 810 0.0
>AT4G35090.1 | chr4:16700937-16703215 REVERSE LENGTH=493
Length = 492
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/492 (83%), Positives = 457/492 (92%)
Query: 1 MDPYKHRPSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIP 60
MDPYK+RP+S NS F+TTNSGAPVWNNNS++TVG RGPILLEDYHL+EKLA FDRERIP
Sbjct: 1 MDPYKYRPASSYNSPFFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIP 60
Query: 61 ERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPR 120
ERVVHARGASAKGFFEVTHDIS+LTCADFLRAPGVQTPVIVRFSTV+HERGSPETLRDPR
Sbjct: 61 ERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPR 120
Query: 121 GFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHP 180
GFAVKFYTREGNFDLVGNN PVFFIRDGMKFPDMVHA KP+PK+++QENWRI+DFFSHHP
Sbjct: 121 GFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHP 180
Query: 181 ESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEA 240
ESL+MF+FLFDD+GIP +YRHM+G GVNTY LINK GK H VKFHWKPTCGVK LL+++A
Sbjct: 181 ESLNMFTFLFDDIGIPQDYRHMDGSGVNTYMLINKAGKAHYVKFHWKPTCGVKSLLEEDA 240
Query: 241 VTVGGTCHSHATKDLTDSIAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL 300
+ VGGT HSHAT+DL DSIAAGNYPEWKL+IQ IDP ED+FDFDPLDVTKTWPEDI+PL
Sbjct: 241 IRVGGTNHSHATQDLYDSIAAGNYPEWKLFIQIIDPADEDKFDFDPLDVTKTWPEDILPL 300
Query: 301 QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNY 360
QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTR+FSYADTQRHRLGPNY
Sbjct: 301 QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRVFSYADTQRHRLGPNY 360
Query: 361 LMLPVNAPKCAYHNNHHDGSMNFMHRDEEVNYFPSRFDAARHAEKVPIPPRVLTGCREKC 420
L LPVNAPKCA+HNNHH+G MNFMHRDEEVNYFPSR+D RHAEK P PP V +G RE+C
Sbjct: 361 LQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDQVRHAEKYPTPPAVCSGKRERC 420
Query: 421 VIDKENNFQQAGERYRSFDPARQDRFLQRWVDALSDPRITHELRGIWISYWSQCDASLGQ 480
+I+KENNF++ GERYR+F P RQ+RF+QRW+DALSDPRITHE+R IWISYWSQ D SLGQ
Sbjct: 421 IIEKENNFKEPGERYRTFTPERQERFIQRWIDALSDPRITHEIRSIWISYWSQADKSLGQ 480
Query: 481 KLASRLNLKPNM 492
KLASRLN++P++
Sbjct: 481 KLASRLNVRPSI 492
>AT1G20630.1 | chr1:7146812-7149609 FORWARD LENGTH=493
Length = 492
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/492 (81%), Positives = 445/492 (90%)
Query: 1 MDPYKHRPSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIP 60
MDPY+ RPSS +S F+TTNSGAPVWNNNS+LTVG RGPILLEDYHL+EKLA FDRERIP
Sbjct: 1 MDPYRVRPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIP 60
Query: 61 ERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPR 120
ERVVHARGASAKGFFEVTHDI+ LT ADFLR PGVQTPVIVRFSTV+HERGSPETLRDPR
Sbjct: 61 ERVVHARGASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPR 120
Query: 121 GFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHP 180
GFAVKFYTREGNFDLVGNN PVFF+RDGMKFPDMVHA KP+PK+++QENWRI+DFFSHHP
Sbjct: 121 GFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHP 180
Query: 181 ESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEA 240
ESLHMFSFLFDD+GIP +YRHMEG GVNTY LINK GK H VKFHWKPTCG+KCL D+EA
Sbjct: 181 ESLHMFSFLFDDLGIPQDYRHMEGAGVNTYMLINKAGKAHYVKFHWKPTCGIKCLSDEEA 240
Query: 241 VTVGGTCHSHATKDLTDSIAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL 300
+ VGG HSHATKDL DSIAAGNYP+W L++Q +DP HED+FDFDPLDVTK WPEDI+PL
Sbjct: 241 IRVGGANHSHATKDLYDSIAAGNYPQWNLFVQVMDPAHEDKFDFDPLDVTKIWPEDILPL 300
Query: 301 QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNY 360
QPVGR+VLNKNIDNFF ENEQ+AFCPA++VPGIHYSDDKLLQTRIFSYAD+QRHRLGPNY
Sbjct: 301 QPVGRLVLNKNIDNFFNENEQIAFCPALVVPGIHYSDDKLLQTRIFSYADSQRHRLGPNY 360
Query: 361 LMLPVNAPKCAYHNNHHDGSMNFMHRDEEVNYFPSRFDAARHAEKVPIPPRVLTGCREKC 420
L LPVNAPKCA+HNNHHDG MNFMHRDEEVNYFPSR D RHAEK P P V +G REKC
Sbjct: 361 LQLPVNAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRLDPVRHAEKYPTTPIVCSGNREKC 420
Query: 421 VIDKENNFQQAGERYRSFDPARQDRFLQRWVDALSDPRITHELRGIWISYWSQCDASLGQ 480
I KENNF+Q GERYRS+D RQ+RF++R+V+ALS+PR+THE+R IWISYWSQ D SLGQ
Sbjct: 421 FIGKENNFKQPGERYRSWDSDRQERFVKRFVEALSEPRVTHEIRSIWISYWSQADKSLGQ 480
Query: 481 KLASRLNLKPNM 492
KLA+RLN++PN
Sbjct: 481 KLATRLNVRPNF 492
>AT1G20620.1 | chr1:7143142-7146193 FORWARD LENGTH=493
Length = 492
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/492 (77%), Positives = 432/492 (87%)
Query: 1 MDPYKHRPSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIP 60
MDPYK+RPSS N+ F+TTN GAPV NN S+LT+GERGP+LLEDYHLIEK+A F RERIP
Sbjct: 1 MDPYKYRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIP 60
Query: 61 ERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPR 120
ERVVHARG SAKGFFEVTHDIS+LTCADFLRAPGVQTPVIVRFSTVVHER SPET+RD R
Sbjct: 61 ERVVHARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIR 120
Query: 121 GFAVKFYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHP 180
GFAVKFYTREGNFDLVGNN PVFFIRDG++FPD+VHA KP+PKTN+QE WRI+D+ SH P
Sbjct: 121 GFAVKFYTREGNFDLVGNNTPVFFIRDGIQFPDVVHALKPNPKTNIQEYWRILDYMSHLP 180
Query: 181 ESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEA 240
ESL + ++FDDVGIP +YRHMEGFGV+TYTLI K GK VKFHWKPTCG+K L D+EA
Sbjct: 181 ESLLTWCWMFDDVGIPQDYRHMEGFGVHTYTLIAKSGKVLFVKFHWKPTCGIKNLTDEEA 240
Query: 241 VTVGGTCHSHATKDLTDSIAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL 300
VGG HSHATKDL D+IA+GNYPEWKL+IQT+DP ED+FDFDPLDVTK WPEDI+PL
Sbjct: 241 KVVGGANHSHATKDLHDAIASGNYPEWKLFIQTMDPADEDKFDFDPLDVTKIWPEDILPL 300
Query: 301 QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNY 360
QPVGR+VLN+ IDNFF E EQLAF P ++VPGI+YSDDKLLQ RIF+Y DTQRHRLGPNY
Sbjct: 301 QPVGRLVLNRTIDNFFNETEQLAFNPGLVVPGIYYSDDKLLQCRIFAYGDTQRHRLGPNY 360
Query: 361 LMLPVNAPKCAYHNNHHDGSMNFMHRDEEVNYFPSRFDAARHAEKVPIPPRVLTGCREKC 420
L LPVNAPKCA+HNNHH+G MNFMHRDEE+NY+PS+FD R AEKVP P TG R KC
Sbjct: 361 LQLPVNAPKCAHHNNHHEGFMNFMHRDEEINYYPSKFDPVRCAEKVPTPTNSYTGIRTKC 420
Query: 421 VIDKENNFQQAGERYRSFDPARQDRFLQRWVDALSDPRITHELRGIWISYWSQCDASLGQ 480
VI KENNF+QAG+RYRS+ P RQDRF++RWV+ LS+PR+THE+RGIWISYWSQ D SLGQ
Sbjct: 421 VIKKENNFKQAGDRYRSWAPDRQDRFVKRWVEILSEPRLTHEIRGIWISYWSQADRSLGQ 480
Query: 481 KLASRLNLKPNM 492
KLASRLN++P++
Sbjct: 481 KLASRLNVRPSI 492
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,342,942
Number of extensions: 572797
Number of successful extensions: 983
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 3
Length of query: 492
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,282,721
Effective search space: 3221978469
Effective search space used: 3221978469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)