BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0724400 Os06g0724400|AK099961
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27280.1  | chr5:9617548-9618369 FORWARD LENGTH=213            195   1e-50
AT1G68730.1  | chr1:25810321-25811128 REVERSE LENGTH=171           79   1e-15

>AT5G27280.1 | chr5:9617548-9618369 FORWARD LENGTH=213
          Length = 212

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 120/171 (70%), Gaps = 15/171 (8%)

Query: 34  VAASNRRHHDDDDEEVAKAHEPTSLASYGLSISPLSKDAAMGLVVSAATGRGWTTGSGME 93
           V  SN++   D D + ++++  +   +       LS D AMGLV+SAA+ +GWTTGSGME
Sbjct: 38  VRLSNKKEDKDYDPQHSESNSSSLFRN-----RTLSNDEAMGLVLSAASVKGWTTGSGME 92

Query: 94  GPPKAAGGGDRPEVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQ 153
           GP   A   D   VST PWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQ
Sbjct: 93  GPSLPAKT-DTDTVSTFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQ 151

Query: 154 CCGCNIFHKLVDNLNLFHEMKCYVGPDFRYEGDAPFNYLDRGED--GDNIF 202
           CCGCN+FHKLVDNLNLFHE+K YV         + F+Y D   D  G N+F
Sbjct: 152 CCGCNVFHKLVDNLNLFHEVKYYV-------SSSSFDYTDAKWDVSGLNLF 195



>AT1G68730.1 | chr1:25810321-25811128 REVERSE LENGTH=171
          Length = 170

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 113 SLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHE 172
           S+  K PRR ++V FTCN CG+RT R IN HAY  G VFVQC GC   HKLVDNL L  E
Sbjct: 96  SIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQCAGCLKHHKLVDNLGLIVE 155

Query: 173 MKCYVGPDFR 182
                  DFR
Sbjct: 156 Y------DFR 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,562,685
Number of extensions: 194398
Number of successful extensions: 607
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)