BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0715000 Os06g0715000|AK107114
         (387 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32760.1  | chr2:13892140-13894295 FORWARD LENGTH=353          246   2e-65

>AT2G32760.1 | chr2:13892140-13894295 FORWARD LENGTH=353
          Length = 352

 Score =  246 bits (628), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 197/344 (57%), Gaps = 21/344 (6%)

Query: 47  KVIDWEDLQQELARVWSLSXXXXXXXXXXXXXXXXXQSALEARKASVQQDNELAEIRERV 106
           K+I+WE+   EL R+WSLS                 +S ++    S+++ NEL E+R+R+
Sbjct: 22  KIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEEMRQRL 81

Query: 107 QARADFMWDLKMHTKKMTEDVDDRREELRIKIRXXXXXXXXXXXARNKLKEADKLLSGEN 166
           +AR   +    +  K   +DV  + E L  ++R           A++KL+E++  L GE+
Sbjct: 82  EARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQLEGES 141

Query: 167 GLHVRLKTVERMLRTRQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAP 226
           G +  LK V   LR RQQ+M +QV+ +YP++  IE  P+           + ++ ES  P
Sbjct: 142 G-YAHLKIVTNKLRKRQQFMVSQVSFIYPLK--IEAGPS-----------QDQELESF-P 186

Query: 227 NGSQNGQAPLA-----ILGLQLSKLTMKKTGYFSDKTEIQNSATALGYVAHAVSLIASYL 281
            GS+ G  PL+     ILGL  S     K  +F+DK E+Q SATALGYVAHAVSLIA YL
Sbjct: 187 GGSRLGTKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYL 246

Query: 282 DVPLRYPLRLGGSRSYVLDRXXXXXXXXXXXXXXXXXXXTTMRTMEFPLFFESQETTRSA 341
            VP+RYPL LGGS++Y+ D                      +  +EFPLF + Q+TTR+A
Sbjct: 247 RVPIRYPLCLGGSKTYIRD-YAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAA 305

Query: 342 YAIFLLNKDIEQLLNHIGAESLGPRHVLANLKQLTTIVQSQQYI 385
           YA+FLLNK+IEQLLN +G  SLGPR VLANLK+L  I+QS  YI
Sbjct: 306 YAVFLLNKNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYI 349



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,546,374
Number of extensions: 226543
Number of successful extensions: 547
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)