BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0714800 Os06g0714800|AK059793
(136 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 71 2e-13
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 70 4e-13
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 67 3e-12
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 65 1e-11
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 60 3e-10
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 59 9e-10
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 59 1e-09
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 57 2e-09
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 55 9e-09
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 55 9e-09
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 52 1e-07
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 50 3e-07
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 49 5e-07
AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223 48 1e-06
AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216 47 2e-06
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
HFL+SCFLCK + +RDI+MYRGD FCS++CRQEQ++ DEA
Sbjct: 96 HFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEA 138
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
HFL+SCFLCK + +RDIFMYRGD FCS++CR+EQ++ DEA
Sbjct: 75 HFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEA 117
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
HFLESC LC+ + + DIFMYRGD AFCS++CR+EQ++ DEA
Sbjct: 15 HFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEA 57
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
HFL SC LC+ + RDI+MYRGD AFCS +CRQEQM DE
Sbjct: 88 HFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDE 129
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FL SC LCK + RDI+MYRGD AFCS +CRQ+Q+ +DE
Sbjct: 78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDE 118
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
FL +C CK +A RDI+MY+GDAAFCS +CR++QM+ DE
Sbjct: 73 FLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEG 114
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FLE CFLC+ + +DI+MY+GD AFCS +CR +QM MDE
Sbjct: 68 FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDE 108
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FL++C LC S+ RDI+MYRG+ AFCS +CR++Q+ +DE
Sbjct: 57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDE 97
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 42 LHFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
L FL++C LC + D+D++MYRGD FCS +CR+ QM +D+
Sbjct: 40 LCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDD 82
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 42 LHFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
L FL++C LC + D+D++MYRGD FCS +CR+ QM +D+
Sbjct: 40 LCFLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDD 82
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 42 LHFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
L FL SC+LC+ + G +DIF+YRG+ AFCS +CR + DE
Sbjct: 180 LGFLNSCYLCRKKLHG-QDIFIYRGEKAFCSTECRSSHIANDE 221
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FL CF CK ++ +DI++YRG+ FCS +CR ++M +D+
Sbjct: 220 FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FL C CK S+ DIFMYRGD AFCS +CR +M M E
Sbjct: 222 FLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSE 262
>AT1G74940.1 | chr1:28146284-28147065 FORWARD LENGTH=223
Length = 222
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDE 84
FL SC LCK + G +DI+MY+G+ FCS +CR Q+ DE
Sbjct: 150 FLSSCCLCKKKLQG-KDIYMYKGEMGFCSAECRSVQIMNDE 189
>AT1G19200.1 | chr1:6625104-6625856 REVERSE LENGTH=216
Length = 215
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 44 FLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEALQ 87
FL SC LCK + G +DI+MY+GD FCS +CR ++ M+++L+
Sbjct: 150 FLTSCCLCKKKLQG-KDIYMYKGDEGFCSKECRSLKI-MEDSLK 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,961,603
Number of extensions: 49104
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 17
Length of query: 136
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 48
Effective length of database: 8,693,961
Effective search space: 417310128
Effective search space used: 417310128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 106 (45.4 bits)