BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0705300 Os06g0705300|AK121711
(289 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10250.1 | chr3:3168371-3170418 REVERSE LENGTH=325 196 8e-51
AT5G04090.2 | chr5:1105672-1107629 REVERSE LENGTH=306 160 7e-40
AT3G61700.2 | chr3:22836414-22838803 FORWARD LENGTH=365 114 6e-26
AT2G46420.1 | chr2:19054891-19056830 FORWARD LENGTH=364 109 1e-24
AT3G55240.1 | chr3:20473876-20474705 REVERSE LENGTH=96 62 4e-10
AT2G29605.1 | chr2:12657909-12660087 REVERSE LENGTH=402 61 9e-10
AT3G28990.1 | chr3:11002351-11003046 REVERSE LENGTH=89 56 3e-08
AT5G02580.1 | chr5:579965-580454 FORWARD LENGTH=92 54 7e-08
AT3G45800.1 | chr3:16829482-16832207 REVERSE LENGTH=591 52 2e-07
AT2G11623.1 | chr2:4660870-4661415 REVERSE LENGTH=111 48 5e-06
>AT3G10250.1 | chr3:3168371-3170418 REVERSE LENGTH=325
Length = 324
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 176/306 (57%), Gaps = 27/306 (8%)
Query: 1 MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYY 60
+S D+ VQNLI CLQLYM++KEVVD L +AKIEP T+ VWQKLEE NREFFKAYY
Sbjct: 9 VSRQDIQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYY 68
Query: 61 LRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNGSNSNLLKQNP-CFLSEST--- 116
LRLM+K+QI FNKLLE Q+ + + + G +S+ NGS+ + Q C+ SE T
Sbjct: 69 LRLMVKHQIMEFNKLLEQQVHHMRQMHPTGVASVQNTNGSHLQSMNQKQLCYPSEHTDQS 128
Query: 117 --------PMPAMPDDVMCNGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDAS-NLLPVQ 167
PM + + NG+S+ + S + +A + +DAS N+L Q
Sbjct: 129 LKSESAHHPMASSLSNAFLNGSSTLNTNVPSSINISTHARR--------VDASPNMLSSQ 180
Query: 168 NANSVLFGVENGTTIKTESGYSSNGNFGFCG--NAFLESCQSIGDASGGSFSSSELNGQP 225
N + NG IK+E+ +++ +F + G NA LE ++GD S +F S+E N QP
Sbjct: 181 TTNMPMMQGMNGGMIKSETAFTNPASFMYGGERNA-LEGHSAVGDTSIPNF-SNESNNQP 238
Query: 226 XXXXXXXXXXXXFGFLSQLPRNF-FSDLPEDFSQSTEILDNYGKSPFLPSEQNNFSDSTG 284
FGFL Q+PRNF SDL DFSQS+EIL++Y +SPFL NF DS
Sbjct: 239 LSDPLLEAEASTFGFLGQIPRNFSLSDLTADFSQSSEILESYDRSPFLVPNAENFLDSRD 298
Query: 285 -GEHTG 289
GE+ G
Sbjct: 299 RGEYQG 304
>AT5G04090.2 | chr5:1105672-1107629 REVERSE LENGTH=306
Length = 305
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 1 MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYY 60
+S D+ VQNLI CLQLYM++KEVVD L +AKIEP T+ VWQKLEE NREFFKAYY
Sbjct: 9 VSREDIQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYY 68
Query: 61 LRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNGSNSNLLKQNPCFLSESTPMPA 120
LRLM+K+QI +N+LLE Q+ + + + +S+ NGS+ + Q P +
Sbjct: 69 LRLMVKHQIMEYNELLEQQINHMRQMHPTAGASVRNRNGSHVPPMNQQQLLYERKEPDQS 128
Query: 121 MPD--DVMCNGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDAS-NLLPVQNANSVLFGVE 177
P+ NG S+ + I + D +D S N L +Q N L
Sbjct: 129 SPNLSSPYLNGGSAINTN--------IPSYVDFSSHSRRVDPSPNSLSLQATNMPLM--- 177
Query: 178 NGTTIKTESGYSSNGNFGFCGNAFLESCQSIGDASGGSFSSSELNGQPXXXXXXXXXXXX 237
IK+E+ Y + + + G E+ ++GD + SFS+ N Q
Sbjct: 178 -QGMIKSETAYQNCAPYMYGG----EAQSTVGDVTIASFSNDSSN-QSLNDPLVDPDAPT 231
Query: 238 FGFLSQLPRNF-FSDLPEDFSQSTEILDNYGKSPFLPSEQNNFSDSTGG-EHTG 289
FG L Q+P+NF SDL DFSQS++IL++Y SPFL ++ NF DS+ EH G
Sbjct: 232 FGSLGQIPQNFSLSDLTADFSQSSDILESYEGSPFLLADAENFLDSSERVEHQG 285
>AT3G61700.2 | chr3:22836414-22838803 FORWARD LENGTH=365
Length = 364
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 138/312 (44%), Gaps = 45/312 (14%)
Query: 1 MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYY 60
+S D++ VQNLI CLQLYM++ EVV L A+I+P T VWQKLEE N +FF+AYY
Sbjct: 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYY 109
Query: 61 LRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNGSNS-------NLLKQNPCFLS 113
+RL LK QI FN LLE Q ++ +Y PGP +PL N N+ P
Sbjct: 110 IRLKLKKQIILFNHLLEHQYHLM--KYPPGPPKVPLAPIQNGMHPMAPVNMPMGYPVLQH 167
Query: 114 ESTPMPAMPDDVMCNGNSS-----GIVDRTQSSDQLIYAGKDIQGLHSSMDASNLLPVQN 168
+P P + G SS G+ + D+ ++ DA+ + N
Sbjct: 168 PQMHVPGHPHHLDAMGVSSCHVVNGVPAPANFHPLRMNTANDMVIDTTANDATPQVIPPN 227
Query: 169 ANSVLFGVENGTTIKTESGYSSNGNFGFCGNAFLESCQSIGDASGGSFSSSELNGQ---- 224
+ ++ + + + +S+G+F F + D SG +S L+
Sbjct: 228 SGAM------PEMVASPASVASSGHFPFAAS----------DMSGMVMDTSVLDSAFTSD 271
Query: 225 --PXXXXXXXXXXXXFGFLSQLPRNF-FSDLPEDFSQSTEI-------LDNYGKSPFLPS 274
P F Q+P NF SDL D S ++ L NY SPFLPS
Sbjct: 272 VGPDGEGAGNSRDSLRSF-DQIPWNFSLSDLTADLSNLGDMYVADLGALGNYPGSPFLPS 330
Query: 275 EQNNFSDSTGGE 286
+ F DS E
Sbjct: 331 DSEIFLDSPEQE 342
>AT2G46420.1 | chr2:19054891-19056830 FORWARD LENGTH=364
Length = 363
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 134/298 (44%), Gaps = 24/298 (8%)
Query: 1 MSGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYY 60
+S D++ VQNLI CLQLYM + EVV L A+I+P T VWQKLEE N EFF+AYY
Sbjct: 47 VSRQDIELVQNLIERCLQLYMSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYY 106
Query: 61 LRLMLKNQITAFNKLLEDQLRIINKEYHPGPSSMPLPNG-----SNSNLLKQNPCFLSES 115
+RL LK QI FN LLE Q + H +P+ NG S +N+ P
Sbjct: 107 IRLKLKKQIVVFNHLLEHQYHLTKYNVHSKVPLVPMQNGIHPMASVNNMPMGYPVLQHPQ 166
Query: 116 TPMPAMP--DDVMCNGNSSGIVDRTQSSDQL----IYAGKDIQGLHSSMDASNLLPVQNA 169
P D + C +S +V+ + I +G D+ + + + ++P +
Sbjct: 167 MHAQGHPHLDPMSCGMSSCHVVNGVPAPANFQPMRINSGNDMVIDTTMAEPTPMIPPNSG 226
Query: 170 NSVLFGVENGTTIKTESGYSSNGNFGFCGNAF--LESCQSIGDASGGSFSSSELNGQPXX 227
S + + + +S+G+F F + + S D++ S + + Q
Sbjct: 227 MSDM--------PVSPASVASSGHFPFAASDMSGMGMDTSALDSAFTSDVGTSVGLQLGS 278
Query: 228 XXXXXXXXXXFGFLSQLPRNF-FSDLPEDFSQSTEI--LDNYGKSPFLPSEQNNFSDS 282
Q+P NF SDL D S ++ L NY SPFLPS+ DS
Sbjct: 279 DGGAGNSRDPLRPFDQIPWNFSLSDLTADLSNLGDLGALGNYPGSPFLPSDSEILLDS 336
>AT3G55240.1 | chr3:20473876-20474705 REVERSE LENGTH=96
Length = 95
Score = 62.0 bits (149), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 2 SGADVDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYL 61
S + + VQ++I CL +M K+E V+ALS+ A I P +T VW++LE+ N+EFFKAY
Sbjct: 6 SASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAYEE 65
Query: 62 RLMLKNQIT 70
R + Q++
Sbjct: 66 RQSKQEQMS 74
>AT2G29605.1 | chr2:12657909-12660087 REVERSE LENGTH=402
Length = 401
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 6 VDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLML 65
+D ++N+I C++ YM +E V+ + KI +T+ +W++L++ N +FF Y+L L
Sbjct: 22 IDTIKNIIATCIRKYMSLEETVNYMQENHKISHHLTKPIWEQLQKENADFFNKYHLIREL 81
Query: 66 KNQITAFNKLLEDQLRII 83
QI FN L Q+ ++
Sbjct: 82 ARQIKLFNSFLGKQVSLM 99
>AT3G28990.1 | chr3:11002351-11003046 REVERSE LENGTH=89
Length = 88
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 9 VQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLMLKNQ 68
VQ++I CL M K+E ++ALS A I P +T VW++L + N++FF+ Y +LM K
Sbjct: 13 VQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYEQKLMKKES 72
Query: 69 IT 70
++
Sbjct: 73 MS 74
>AT5G02580.1 | chr5:579965-580454 FORWARD LENGTH=92
Length = 91
Score = 54.3 bits (129), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 9 VQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLR 62
V +LI C+ M K+E +DAL + A I+P +T VW++L + N+EFF+AY R
Sbjct: 15 VHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYERR 68
>AT3G45800.1 | chr3:16829482-16832207 REVERSE LENGTH=591
Length = 590
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 6 VDKVQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLR--L 63
+DKV+NLI C+ YM +E V L I +T +W++L++ + EFFK YY L
Sbjct: 122 IDKVKNLIETCIYKYMSLEETVTYLEDNHNISHHLTITIWEQLQKESPEFFKKYYFHFSL 181
Query: 64 MLKN 67
M++N
Sbjct: 182 MVEN 185
>AT2G11623.1 | chr2:4660870-4661415 REVERSE LENGTH=111
Length = 110
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 9 VQNLIHCCLQLYMDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLMLKNQ 68
V+NLI C+ YM +E + KI +T+ +W++L++ + EFFK YY L Q
Sbjct: 46 VKNLIETCIYKYMSLEETETYVEDNHKISHHLTKPIWEQLQKESPEFFKKYYFLCELARQ 105
Query: 69 ITAFN 73
I +F+
Sbjct: 106 IVSFS 110
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,653,263
Number of extensions: 294085
Number of successful extensions: 686
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 10
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)