BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0705000 Os06g0705000|J075046P19
         (267 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55830.1  | chr3:20715101-20717133 FORWARD LENGTH=335          228   4e-60
AT5G04500.1  | chr5:1283604-1286155 FORWARD LENGTH=766             67   9e-12
AT1G80290.2  | chr1:30188420-30189574 FORWARD LENGTH=338           56   2e-08

>AT3G55830.1 | chr3:20715101-20717133 FORWARD LENGTH=335
          Length = 334

 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 131/181 (72%), Gaps = 5/181 (2%)

Query: 92  INTWKRYDLLRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNC-----SDGGGAGV 146
           +NTWKRYDLL++SV+HY+ C  +D++H+VWSEP  P+E L+  + N       DG    +
Sbjct: 78  MNTWKRYDLLKKSVSHYASCSRLDSIHIVWSEPNPPSESLKEYLHNVLKKKTRDGHEVEL 137

Query: 147 RFVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPRM 206
           RF IN EDSLNNRF+ I+ L TDAVFS+DDD+I PC T+ FAF VW+SAP  MVGFVPR+
Sbjct: 138 RFDINKEDSLNNRFKEIKDLKTDAVFSIDDDIIFPCHTVDFAFNVWESAPDTMVGFVPRV 197

Query: 207 HWLADPGSNAKEYRYGSWWSVWWTGTYSMVLSKASFFHRQYLDLYTIRMLPSIRDYVNEN 266
           HW       A  Y Y  WWSVWW+GTYSMVLSKA+FFH++YL LYT  M  SIR++  +N
Sbjct: 198 HWPEKSNDKANYYTYSGWWSVWWSGTYSMVLSKAAFFHKKYLSLYTNSMPASIREFTTKN 257

Query: 267 R 267
           R
Sbjct: 258 R 258



>AT5G04500.1 | chr5:1283604-1286155 FORWARD LENGTH=766
          Length = 765

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 29/173 (16%)

Query: 101 LRRSVAHYSGCGGVDAVHVVWSE-PEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNR 159
           L+  V  YS C  V  + V+W++ P     EL  +V          VR  +  ++SLNNR
Sbjct: 532 LKMYVKRYSRCPSVKEIVVIWNKGPPPDLSELDSAV---------PVRIRVQKQNSLNNR 582

Query: 160 FRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPR-----MHWLADPGS 214
           F     + T AV  +DDD+++PC  +   F VW+  P  +VGF PR     M + A+  +
Sbjct: 583 FEIDPLIKTRAVLELDDDIMMPCDDIEKGFRVWREHPERLVGFYPRFVDQTMTYSAEKFA 642

Query: 215 NAKEYRYGSWWSVWWTGTYSMVLSKASFFHRQY-LDLYTIRMLPSIRDYVNEN 266
            + +              Y+M+L+ A+F   ++  D+Y        R +V+E 
Sbjct: 643 RSHK-------------GYNMILTGAAFMDVRFAFDMYQSDKAKLGRVFVDEQ 682



>AT1G80290.2 | chr1:30188420-30189574 FORWARD LENGTH=338
          Length = 337

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 92  INTWKRYD--LLRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNCSD--GGGAGVR 147
           IN +  Y   LL+  VA YS    V ++ V+W  P  P + L     N +    G A + 
Sbjct: 60  INGYSEYRIPLLQTIVASYSSSSIVSSILVLWGNPSTPDQLLDQLYQNLTQYSPGSASIS 119

Query: 148 FVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPRMH 207
            +  +  SLN RF P   + T AV   DDD+ +   +L FAF+VW+S P  +VG   R H
Sbjct: 120 LIQQSSSSLNARFLPRSSVDTRAVLICDDDVEIDQRSLEFAFSVWKSNPDRLVGTFVRSH 179

Query: 208 WLADPGSNAKEYRYGSWWSVWWTGTYSMVLSKASFFHRQYLDLYTIR 254
                G          W        YS+VL+K     + YL  Y+ +
Sbjct: 180 GFDLQGK--------EWIYTVHPDKYSIVLTKFMMMKQDYLFEYSCK 218



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,063,907
Number of extensions: 199691
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)