BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0702800 Os06g0702800|AK073948
         (365 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10572.1  | chr3:3304346-3306306 FORWARD LENGTH=334            157   9e-39

>AT3G10572.1 | chr3:3304346-3306306 FORWARD LENGTH=334
          Length = 333

 Score =  157 bits (397), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 37/349 (10%)

Query: 9   NLWKQIDDAEHYLVSGLFEQAVSTALSVSSQVHSA----AMENSCDHDELLEMLELAGMV 64
           ++W +I+ +E YLV  ++E+A S + S+  ++       + E S    +  +MLE AGMV
Sbjct: 5   DIWGEIERSESYLVCSMYEEAESLSSSILKRIFGNIDVLSDEASQGDHQFHDMLESAGMV 64

Query: 65  LVQALKELKRTSEMFIQLKTIYGSVASIPLKIFITGATMHMAGGSGSDLRPIFDEYLAKW 124
           LVQ+L  + RT E+  +L+ ++G VA+IP+++ +TG  + ++ GS   +R I +E+   W
Sbjct: 65  LVQSLHGIGRTVEIVNELRDVFGEVAAIPVQVLLTGVCLQISNGSYLGVRDILEEFFRIW 124

Query: 125 RYTDDQVYVLDEGKNSSSNGLVVTSVMSPEQYFEVAELYTVTFLSVVSHETATAISWTEK 184
            Y D+  Y+L++    S+ G    + +  ++Y EV ELYT   L+  S++   AISW EK
Sbjct: 125 VYKDNH-YILNDA-GVSTKGFHAKNCLDIDEYMEVVELYTFGVLAKFSNDMGLAISWVEK 182

Query: 185 AELTEQDRQDLLRKLHALQSAANKKSTNQGAKLSESAERNLSTSQNGSISPAHEDATKSS 244
           A L E+ RQ +LR+LH+L S     S  + +K S  A  N                 KS 
Sbjct: 183 AALPEERRQGILRRLHSLLSLKTASSFEENSKDSSYAVVN---------------NKKSL 227

Query: 245 APTHNGNIQGLRKALPKSIQPSFQRVTNQFDPL-FWWFHSFRIKFGKVHVVLPSGKVMF- 302
               N  I             SF +++ Q +P   W  H   +K G     +  GKV   
Sbjct: 228 GNEKNDEID------------SFLKLSKQHEPWSLWSSHPLSLKVGNTQFSMSRGKVAVS 275

Query: 303 LFSLLFSTLYILRRKGAALKRTAFQQISSLRRGFLDALQLAFSTQINPL 351
           L  L+    Y L+RK AAL R   +Q+ S R+  +D  +LAFS Q+NPL
Sbjct: 276 LVGLIIC--YALKRKRAALIRIIRRQMESTRKAIVDFWKLAFSYQVNPL 322



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,888,573
Number of extensions: 267681
Number of successful extensions: 958
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)