BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0701600 Os06g0701600|AJ491855
         (509 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10310.1  | chr4:6392008-6395667 FORWARD LENGTH=507            303   1e-82

>AT4G10310.1 | chr4:6392008-6395667 FORWARD LENGTH=507
          Length = 506

 Score =  303 bits (777), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 257/454 (56%), Gaps = 16/454 (3%)

Query: 63  PRYIDMFFLSTSAVTVTGLATTQMEDLSSSQIAVLTLLMFLGSEMFLSFLGLVLESSKQN 122
           P   D+FF S SA+TV+ ++T  ME  S++Q+  LT+LMFLG E+F SFL L +    + 
Sbjct: 51  PHDFDLFFTSVSAITVSSMSTVDMEVFSNTQLIFLTILMFLGGEIFTSFLNLYVSYFTKF 110

Query: 123 KHDPENR-------RVSSVTVCEQSHLEEAIPQTPSMNSTDIKRSCHKYLVFVVLAYMII 175
              P N+         S  ++ ++  +E        +   D + S  K L  VVL+Y ++
Sbjct: 111 VF-PHNKIRHILGSYNSDSSIEDRCDVETVTDYREGLIKIDERAS--KCLYSVVLSYHLV 167

Query: 176 ILVTGSLLVFMYIAHVSSARDVLTRKSINKALFSISVTVSSFTNGGLLPTNESMAVFSSN 235
             + GS+L+ +Y+  V +ARDVL+ K I+   FS+  TVS+F N G +PTNE+M +F  N
Sbjct: 168 TNLVGSVLLLVYVNFVKTARDVLSSKEISPLTFSVFTTVSTFANCGFVPTNENMIIFRKN 227

Query: 236 NXXXXXXXXXXXAGSTLLPMFLRLVIWALRGLRLAKAEEPDFMMNNSSSVGFSHLLPNLQ 295
           +            G+TL P FL L+IW L   ++ K +E  +++ N + +G+SHLL    
Sbjct: 228 SGLIWLLIPQVLMGNTLFPCFLVLLIWGL--YKITKRDEYGYILKNHNKMGYSHLLSVRL 285

Query: 296 TIFLAAVEVAFVGMTVILFCCLNWDSAVFAGLTSLQKITNALFMAVSARQAGENSIDCSL 355
            + L    + F+ + ++ FC   W S    G++S +K+  +LF  V++R  GE  +D S 
Sbjct: 286 CVLLGVTVLGFLIIQLLFFCAFEWTSESLEGMSSYEKLVGSLFQVVNSRHTGETIVDLST 345

Query: 356 VAPAALVLFMVMMYTPSLTKLFSACQDHKQIGPE-SDDRTSKGKPFLKT-MAFSPLAFNT 413
           ++PA LVLF++MMY P  T LF    + K I  E  DD +  GK   K+ +  S L+F T
Sbjct: 346 LSPAILVLFILMMYLPPYT-LFMPLTEQKTIEKEGGDDDSENGKKVKKSGLIVSQLSFLT 404

Query: 414 TVIMLVCITERRSISTDPLNFSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQDGIACHEK 473
             I L+ ITER+++  DP+NF+  NI  EVISAYGN+G +TGYSC R++   DG  C + 
Sbjct: 405 ICIFLISITERQNLQRDPINFNVLNITLEVISAYGNVGFTTGYSCERRVDISDG-GCKDA 463

Query: 474 PYSFSGWWSEPGKLILVLAMLYGRLNSKDSTSAR 507
            Y F+G WS  GK +L++ M YGR     + S R
Sbjct: 464 SYGFAGRWSPMGKFVLIIVMFYGRFKQFTAKSGR 497



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,628,908
Number of extensions: 366513
Number of successful extensions: 1157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1152
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 406
Effective length of database: 8,282,721
Effective search space: 3362784726
Effective search space used: 3362784726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)