BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0685300 Os06g0685300|J065065G21
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04220.2 | chr5:1155985-1158620 REVERSE LENGTH=541 119 3e-28
AT2G20990.3 | chr2:9014827-9017829 FORWARD LENGTH=580 105 3e-24
AT2G21010.1 | chr2:9020944-9021870 FORWARD LENGTH=257 102 3e-23
AT1G20080.1 | chr1:6962236-6964912 FORWARD LENGTH=538 101 8e-23
AT2G21040.1 | chr2:9026157-9027310 FORWARD LENGTH=262 49 5e-07
>AT5G04220.2 | chr5:1155985-1158620 REVERSE LENGTH=541
Length = 540
Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 68/81 (83%), Gaps = 2/81 (2%)
Query: 13 RDPRWNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHVDINLVDVVNNGRIN 72
RDPRWNEEFQF ++E PV + I +EV+SK G FR+KE LGHVDINL DVV+NGRIN
Sbjct: 461 RDPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFH--FRSKEELGHVDINLDDVVDNGRIN 518
Query: 73 EKYHLINSRNGMVHVEMKWST 93
+KYHLINSRNG++H+E++W+T
Sbjct: 519 QKYHLINSRNGIIHIEIRWTT 539
>AT2G20990.3 | chr2:9014827-9017829 FORWARD LENGTH=580
Length = 579
Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 69/88 (78%), Gaps = 5/88 (5%)
Query: 9 IKKTRDPRWNEEFQFMVDEAPVDDKIHIEVVS--KRRGLRLPFRNKESLGHVDINLVDVV 66
+KK RDPRWNEEF FM++E PV +K+H+EV+S R GL P KE+LG+VDI +VDVV
Sbjct: 494 VKKNRDPRWNEEFTFMLEEPPVREKLHVEVLSTSSRIGLLHP---KETLGYVDIPVVDVV 550
Query: 67 NNGRINEKYHLINSRNGMVHVEMKWSTV 94
NN R+N+K+HLI+S+NG + +E++W T
Sbjct: 551 NNKRMNQKFHLIDSKNGKIQIELEWRTA 578
>AT2G21010.1 | chr2:9020944-9021870 FORWARD LENGTH=257
Length = 256
Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 5/88 (5%)
Query: 9 IKKTRDPRWNEEFQFMVDEAPVDDKIHIEV--VSKRRGLRLPFRNKESLGHVDINLVDVV 66
+KK +DP+WNEEF FM++E PV +K+H+EV S R GL P KE+LG+VDI +VDVV
Sbjct: 171 VKKNKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLLHP---KETLGYVDIPVVDVV 227
Query: 67 NNGRINEKYHLINSRNGMVHVEMKWSTV 94
NN R+N+K+HLI+S+NG + +E+ W T
Sbjct: 228 NNKRMNQKFHLIDSKNGKIQIELDWQTA 255
>AT1G20080.1 | chr1:6962236-6964912 FORWARD LENGTH=538
Length = 537
Score = 101 bits (251), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 66/83 (79%), Gaps = 3/83 (3%)
Query: 9 IKKTRDPRWNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHVDINLVDVVNN 68
+KK R+PRW+E+FQF +DE P++DK+H+EV+S L P KE+LG+V INL DVV+N
Sbjct: 454 VKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSRLIHP---KETLGYVVINLGDVVSN 510
Query: 69 GRINEKYHLINSRNGMVHVEMKW 91
RIN+KYHLI+S+NG + +E++W
Sbjct: 511 RRINDKYHLIDSKNGRIQIELQW 533
>AT2G21040.1 | chr2:9026157-9027310 FORWARD LENGTH=262
Length = 261
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 9 IKKTRDPRWNEEFQFMVDEAPVDDKIHIEVVS 40
+KK +DP+WNEEF FM++E P+ +K+H++V S
Sbjct: 52 VKKNKDPKWNEEFSFMLEEPPIHEKMHVKVFS 83
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,138,968
Number of extensions: 80400
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 5
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)