BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0665500 Os06g0665500|AK073262
         (491 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20070.1  | chr4:10861548-10864529 FORWARD LENGTH=526          551   e-157
AT5G43600.1  | chr5:17512651-17515280 FORWARD LENGTH=477          157   9e-39

>AT4G20070.1 | chr4:10861548-10864529 FORWARD LENGTH=526
          Length = 525

 Score =  551 bits (1421), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/440 (62%), Positives = 332/440 (75%), Gaps = 4/440 (0%)

Query: 41  YREILRDETVLRLKELGKISDGEGYLERTFLSPASIRASAVIISWMKDAGLTTWIDQMGN 100
           ++ ILRDE V RL ELG++SD   +LERTF+SPASIRA  +I  WM+DAGL+TW+D MGN
Sbjct: 88  HQAILRDEAVARLHELGQVSDAATHLERTFMSPASIRAIPLIRGWMEDAGLSTWVDYMGN 147

Query: 101 IHGRFEPTNSTKEALLIGSHMDTVIDAGMYDGALGIISAISALKVLKVTGRLQRLTRPVE 160
           +HGR EP N + +ALLIGSHMDTVIDAG YDG+LGIISAISALKVLK+ GRL  L RPVE
Sbjct: 148 VHGRVEPKNGSSQALLIGSHMDTVIDAGKYDGSLGIISAISALKVLKIDGRLGELKRPVE 207

Query: 161 VIAFSDEEGVRFQTTFLGSAAVAGTLPESILQVSDKSGTTVQDVLKLNSLEGTANALGEV 220
           VIAFSDEEGVRFQ+TFLGSAA+AG +P S L+V+DKSG +VQD LK NS++ T   L ++
Sbjct: 208 VIAFSDEEGVRFQSTFLGSAALAGIMPVSRLEVTDKSGISVQDALKENSIDITDENLMQL 267

Query: 221 RYSPESVGSYVEVHIEQGPVLEALRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRR 280
           +Y P SV  YVEVHIEQGPVLE + YPLGVVKGIAGQTRLKV + GSQGHAGTVPM +R+
Sbjct: 268 KYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMSMRQ 327

Query: 281 DPMXXXXXXXXXXXXXCKEPNKFLTYDEECGCFTEESLAG-LVCTVGELLTWPSASNVIP 339
           DPM             CK P  +L+ + +C   T ESLA  LVCTVGE+ TWPSASNVIP
Sbjct: 328 DPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWPSASNVIP 387

Query: 340 GQVNFTVDIRAMDDKVRETIVTSFSRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRL 399
           GQV FTVD+R +DD  R+ I+   S  + Q CD R + C++E+KH A A   D +L+ +L
Sbjct: 388 GQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRSLLCSIERKHDADAVMSDPQLSLQL 447

Query: 400 ERATRSTISSMAAGVRRAGGETPVLMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEES 459
           + A +S +  M   V+    E PVLMSGAGHDAMAMA LTKVGMLFVRCRGG+SHSP E 
Sbjct: 448 KSAAQSALKKMTGEVQD---EVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEH 504

Query: 460 VMDDDVWAAGLALVNFIDQN 479
           V+DDDV AAGLA++ F++  
Sbjct: 505 VLDDDVGAAGLAILEFLESQ 524



>AT5G43600.1 | chr5:17512651-17515280 FORWARD LENGTH=477
          Length = 476

 Score =  157 bits (398), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 190/424 (44%), Gaps = 43/424 (10%)

Query: 52  RLKELGKISDGEG-YLERTFLSPASIRASAVIISWMKDAGLTTWIDQMGNIHGRFEPTNS 110
           ++ EL   SD     + R   +   + A   + + M  AGLT   D +GNI G+++    
Sbjct: 69  QIDELSSFSDAPSPSVTRVLYTDKDVSARRYVKNLMALAGLTVREDAVGNIFGKWDGLEP 128

Query: 111 TKEALLIGSHMDTVIDAGMYDGALGIISAISALKVLKVTGRLQRLTRPVEVIAFSDEEGV 170
              A+  GSH+D +  +G YDG +G++ AI A+ VLK +G   +  R +E+I F+ EE  
Sbjct: 129 NLPAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGF--KPKRSLEIILFTSEEPT 186

Query: 171 RFQTTFLGSAAVAGTLPESILQVSDKSGTTVQDVLKLNSLEGTANA---------LGEVR 221
           RF  + LGS  +AG+      ++++   TTV D   ++ +E   +A         L  V 
Sbjct: 187 RFGISCLGSRLLAGS-----KELAEALKTTVVDGQNVSFIEAARSAGYAEDKDDDLSSVF 241

Query: 222 YSPESVGSYVEVHIEQGPVLEALRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRRD 281
               S  +++E+HIEQGP+LE     +GVV  IA    LKV   G+ GHAG V M  R D
Sbjct: 242 LKKGSYFAFLELHIEQGPILEDEGLDIGVVTAIAAPASLKVEFEGNGGHAGAVLMPYRND 301

Query: 282 PMXXXXXXXXXXXXXCKEPNKFLTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQ 341
                            E     T                V TVG L   P A N IP +
Sbjct: 302 AGLAAAELALAVEKHVLESESIDT----------------VGTVGILELHPGAINSIPSK 345

Query: 342 VNFTVDIRAMDDKVRETIVTSFSRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRLER 401
            +  +D R +D+  R T++             R V  + E K      P    L+ +L  
Sbjct: 346 SHLEIDTRDIDEARRNTVIKKIQESANTIAKKRKVKLS-EFKIVNQDPPA---LSDKL-- 399

Query: 402 ATRSTISSMAAGVRRAGGETPVLMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEESVM 461
                I  MA           +++S A HD++ MAR++ +GM+F+ C  G SH PEE   
Sbjct: 400 ----VIKKMAEAATELNLSHKMMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYSS 455

Query: 462 DDDV 465
            +D+
Sbjct: 456 PEDM 459



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,885,646
Number of extensions: 337771
Number of successful extensions: 749
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 3
Length of query: 491
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 388
Effective length of database: 8,282,721
Effective search space: 3213695748
Effective search space used: 3213695748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)