BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0663100 Os06g0663100|015-096-B05
         (156 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35400.2  | chr5:13599416-13602240 REVERSE LENGTH=472          112   1e-25

>AT5G35400.2 | chr5:13599416-13602240 REVERSE LENGTH=472
          Length = 471

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 73/120 (60%), Gaps = 6/120 (5%)

Query: 38  HAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTXXXXXXXXXXXXKDENGY 97
           + HY+H DAC   RW A+E++ +MY RPW  V+DFY+  V                ++  
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVE---GNLSVLSLFQPKKSLV 62

Query: 98  SLDTNGEDYTAPSENQTSTKSSKD-RGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQG 156
             D   E+    SE +TST+  KD R GRWERV FKIVLSY+G SFDGWQKQP L+TVQG
Sbjct: 63  HDDGITEEMLLESEPETSTR--KDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQG 120



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,997,382
Number of extensions: 106273
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)