BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0662800 Os06g0662800|Os06g0662800
         (228 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65680.1  | chr1:24427266-24428399 FORWARD LENGTH=274           52   3e-07
AT2G20750.1  | chr2:8941185-8942430 FORWARD LENGTH=272             49   1e-06

>AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274
          Length = 273

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 129 KLSFISYEVTFKVGEASSGKSLELVTNVA-----ISKVEIKEKGSKD-WVTLKESSTNTW 182
           + ++I   VTF+V + S+  S  ++         I ++E+K+    D W+++ +S    W
Sbjct: 167 ECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVW 226

Query: 183 TIKSEAPLKGPFSIRFLAKNGGYRVV-DDVIPESFTAGSKYKSGINI 228
            +   +PL+ P S+R  +   G  VV  +VIP ++  G+ YKS +N 
Sbjct: 227 KLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273



>AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272
          Length = 271

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 111 YKSVVMDRMEAKPALRGAKLSFISYEVTFKVGEASSGKSLELVTNVA-----ISKVEIKE 165
           +  V+ +R       R     +    + F V   S+   L L+         I  + I++
Sbjct: 145 HNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQ 204

Query: 166 KGSKDWVTLKESSTNTWTIKSEAPLKGPFSIRFLA-KNGGYRVVDDVIPESFTAGSKYKS 224
            GSK+W+++K      W I  E PLKGPFS++     N       DVIP ++   + Y S
Sbjct: 205 AGSKEWISMKHIWGANWCI-VEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTS 263

Query: 225 GINI 228
            +N 
Sbjct: 264 RLNF 267



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,377,329
Number of extensions: 173895
Number of successful extensions: 415
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)