BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0662200 Os06g0662200|AK065941
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24800.1  | chr5:8515259-8516541 FORWARD LENGTH=278            111   4e-25
AT5G28770.2  | chr5:10796648-10798147 REVERSE LENGTH=315           89   2e-18
AT4G02640.2  | chr4:1154031-1156085 FORWARD LENGTH=418             82   4e-16
AT3G54620.1  | chr3:20218085-20220341 REVERSE LENGTH=404           80   1e-15

>AT5G24800.1 | chr5:8515259-8516541 FORWARD LENGTH=278
          Length = 277

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 16/166 (9%)

Query: 136 KRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKGENSSLFKQLTESSQQFNTAVTDNR 195
           KRIRRM             KQ  L +LE+QV+ LKG+NS+L+KQL +++QQF +A T+NR
Sbjct: 122 KRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNR 181

Query: 196 ILKSDVEALRVKVKMAEDMVARAAMSCGLGQL---GLAP---LLSSRKMCQALDMLSLPR 249
           +LKSDVE LRVKVK+AED+VAR +++  L QL    L+P    +SS              
Sbjct: 182 VLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPPSHSISSLHYTGNTSPAITVH 241

Query: 250 NDACGFKGLNLGRQVQNSPVQSAASLESLDNRISSEVTSCSADVWP 295
           +D   F G+ L  Q  +SP         L N +SSE  SC +D+WP
Sbjct: 242 SDQSLFPGMTLSGQ-NSSP--------GLGN-VSSEAVSCVSDIWP 277



>AT5G28770.2 | chr5:10796648-10798147 REVERSE LENGTH=315
          Length = 314

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 10/116 (8%)

Query: 133 TETKRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKGENSSLFKQLTESSQQFNTAVT 192
           T  KR++RM+            KQA LSELE+QV QL+ ENS L K LT+ +Q FN A  
Sbjct: 150 TNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASV 209

Query: 193 DNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSRKMCQALDMLSLP 248
           +NR+LK+++E LR KVKMAE+ V R          G  P+     M Q +  +SLP
Sbjct: 210 ENRVLKANIETLRAKVKMAEETVKRLT--------GFNPMF--HNMPQIVSTVSLP 255



>AT4G02640.2 | chr4:1154031-1156085 FORWARD LENGTH=418
          Length = 417

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 8/106 (7%)

Query: 131 KSTETKRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKGENSSLFKQLTESSQQFNTA 190
           K  + K+ RRM+            KQ Q S+LE+QV  LKGE+SSL KQL+  + +++ A
Sbjct: 218 KPEDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEA 277

Query: 191 VTDNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSR 236
              NRILK+D+E LR KVKMAE+ V R          G+ P+L  R
Sbjct: 278 AVGNRILKADIETLRAKVKMAEETVKRVT--------GMNPMLLGR 315



>AT3G54620.1 | chr3:20218085-20220341 REVERSE LENGTH=404
          Length = 403

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 8/104 (7%)

Query: 133 TETKRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKGENSSLFKQLTESSQQFNTAVT 192
           T+ KR RRM+            KQ Q++E ++QV QL+ E+S+L  +L++ + +++ A  
Sbjct: 228 TDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAAV 287

Query: 193 DNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSR 236
           DNRIL++D+E LR KVKMAE+ V R          G+ PL  SR
Sbjct: 288 DNRILRADIETLRTKVKMAEETVKRVT--------GVNPLHWSR 323



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,394,172
Number of extensions: 210831
Number of successful extensions: 554
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)