BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0659200 Os06g0659200|AK105525
         (167 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04050.2  | chr5:1096092-1098512 FORWARD LENGTH=696            181   1e-46

>AT5G04050.2 | chr5:1096092-1098512 FORWARD LENGTH=696
          Length = 695

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 106/132 (80%)

Query: 35  KDLKVTNDDGVAEVHFPTEREIRMMGDKNLSDPKPVDGALTMIFVRLAVDDTTYPCVAHF 94
           K +KV++ DG  E HFP+ERE++MMGDKNLSDPKPVDG L+++ +RLA D+  + C A F
Sbjct: 541 KAIKVSDLDGREEAHFPSEREVKMMGDKNLSDPKPVDGTLSLLLIRLASDEPLHHCAASF 600

Query: 95  CAETDTVIYRIRLLQNRLNVDPLNEKKWVQGLSAIHESLNKKCLPLCPMHASDLLLGKIT 154
           C  +DT+++R+ LLQNRL+++PL+E+KWV G+  IH +LN+KCLPLC  H SD+ LGKIT
Sbjct: 601 CERSDTIMHRVHLLQNRLHINPLDEEKWVPGMGTIHSALNRKCLPLCSTHISDVYLGKIT 660

Query: 155 LQDIDCTRFVDV 166
           LQD+D + F+D+
Sbjct: 661 LQDVDSSSFIDL 672



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,585,541
Number of extensions: 136751
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)