BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0656300 Os06g0656300|AK060127
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35760.1 | chr2:15032059-15033094 FORWARD LENGTH=202 64 4e-11
AT4G25830.1 | chr4:13133727-13134790 FORWARD LENGTH=176 60 7e-10
AT4G16442.1 | chr4:9272042-9272970 REVERSE LENGTH=183 56 1e-08
>AT2G35760.1 | chr2:15032059-15033094 FORWARD LENGTH=202
Length = 201
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 40 NTQTETVLFIRKKATVKDVQXXXXXXXXXXXXXXXXXXXXXRC---FYLSRFADGKPCRH 96
+ Q + I+KKA D++ RC R KP
Sbjct: 52 DVQVREIFMIQKKAKFTDMKALVLLVVVNGIAAGYSLVQAVRCVVGLMKGRVLFSKP--- 108
Query: 97 RRAIAWLCFLLDKGCAYIXXXXXXXXXXXXXXXLYGTHALQWTKLCNIYTRFCEQVAGSL 156
+AW F D+ AY+ G LQW K+CN+Y +FC QV +
Sbjct: 109 ---LAWAIFFGDQAVAYLCVAGVAAAAQSAAFAKLGEPELQWMKICNMYGKFCNQVGEGI 165
Query: 157 VCAMLAAVGTALLSVVSARNLFRLY 181
A+ A +G L+S +SA +FRLY
Sbjct: 166 ASALFACIGMVLISCISAFGVFRLY 190
>AT4G25830.1 | chr4:13133727-13134790 FORWARD LENGTH=176
Length = 175
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 102 WLCFLLDKGCAYIXXXXXXXXXXXXXXXLYGTHALQWTKLCNIYTRFCEQVAGSLVCAML 161
W +LLD+ AY+ + G+ LQW K C +TRFC Q+ +++ +
Sbjct: 84 WFSYLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKWCYKFTRFCFQMGSAIILNYI 143
Query: 162 AAVGTALLSVVSARNLFRLY 181
AA LLS +SA NLFRLY
Sbjct: 144 AAALMVLLSSISAFNLFRLY 163
>AT4G16442.1 | chr4:9272042-9272970 REVERSE LENGTH=183
Length = 182
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 3/142 (2%)
Query: 40 NTQTETVLFIRKKATVKDVQXXXXXXXXXXXXXXXXXXXXXRCFYLSRFADGKPCRHRRA 99
+T+ + + I+K A D++ RC + GK +
Sbjct: 33 DTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAAVYSLLQSVRCVVGTM--KGK-VLFSKP 89
Query: 100 IAWLCFLLDKGCAYIXXXXXXXXXXXXXXXLYGTHALQWTKLCNIYTRFCEQVAGSLVCA 159
+AW F D+ AY+ G LQW ++C +Y +FC Q+A + A
Sbjct: 90 LAWAFFSGDQAMAYLNVAAIAATAESGVIAREGEEDLQWMRVCTMYGKFCNQMAIGVSSA 149
Query: 160 MLAAVGTALLSVVSARNLFRLY 181
+LA++ +S +SA +LFRLY
Sbjct: 150 LLASIAMVFVSCISAFSLFRLY 171
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,127,958
Number of extensions: 50297
Number of successful extensions: 109
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 109 (46.6 bits)