BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0655500 Os06g0655500|AK069365
         (384 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24540.1  | chr2:10426414-10427532 FORWARD LENGTH=373          137   7e-33
AT1G30090.1  | chr1:10559746-10560942 REVERSE LENGTH=399          126   2e-29

>AT2G24540.1 | chr2:10426414-10427532 FORWARD LENGTH=373
          Length = 372

 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 150/366 (40%), Gaps = 33/366 (9%)

Query: 31  LIPGLPEEVAEKCLLHLPFLYHRLFRTVSSTWNRFLTXXXXXXXXXXXXXXXXXXXXXXX 90
           LI GLP ++AE CLL LP+ YH L+R+VSS+WN+ +T                       
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAF 87

Query: 91  XXXXXXXRRLQCQALDPFSRRWXX---XXXXXXXXXXXXXXXXXXXPRRXXXXXXXXXXX 147
                   R+Q Q+LD  S RW                        PR+           
Sbjct: 88  NKSTA---RIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGG-- 142

Query: 148 XXDKXXXXXXXXXXXXNGWEEAAGMGTARGYMAAGEVGGRLVVAGE----DGEA----EV 199
                           N W   + M + R Y  +G V G+++  G     +GEA    E 
Sbjct: 143 ---DVNRSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVES 199

Query: 200 FDPEEXXXXXXXXXXXXXXXXXXXXXXXXKLYVTEGWAWPFERAPRGAVYDAASDSWSEM 259
           +DP+                         ++ VTEGWAWPF   P G VYD+   +W EM
Sbjct: 200 YDPDNDTWTVVKKLPMVLAKYDSAVIGK-EMCVTEGWAWPFMFPPMGQVYDSDEGTWREM 258

Query: 260 ARGMREGWTGSCAVAGGRMYIVAEYGEWRLKRYDEPRDEWRMVAGSGVPPE-VRRPHXXX 318
           + GM+EGWTG   V   R+++++E+G++ +K Y    D WR V+G  +  E +RRP    
Sbjct: 259 SGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPF--- 315

Query: 319 XXXXXXXXXXXXXIYVVGAGLDVAIGTVSPSPAIHGGDDERVDWEVVKGPAEFAGLAPCN 378
                        ++VV +G++VA G VS         D  V+W +V  P      +P +
Sbjct: 316 -----AVTGADDRVFVVASGINVAEGRVSEGQ----NGDFSVEWRMVSSPKSSIQFSPAS 366

Query: 379 AQVLYA 384
             VLY 
Sbjct: 367 CHVLYV 372



>AT1G30090.1 | chr1:10559746-10560942 REVERSE LENGTH=399
          Length = 398

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 164 NGWEEAAGMGTARGYMAAGEVGGRLVVAGEDGE-------AEVFDPEEXXXXXXXXXXXX 216
           N W     M TAR + A+G + G +  AG +         AEV +P +            
Sbjct: 185 NHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSNMVAH 244

Query: 217 XXXXXXXXXXXXKLYVTEGWAWPFERAPRGAVYDAASDSWSEMARGMREGWTGSCAVAGG 276
                       KL VTEGW WPF  +PRG VYD  +D W  M+ G+REGWTG+  V   
Sbjct: 245 MASYDTAVLNG-KLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYD 303

Query: 277 RMYIVAEYGEWRLKRYDEPRDEWRMVAGSGVPPEVRRPHXXXXXXXXXXXXXXXXIYVVG 336
           R++IV+E    ++K YD   D W  + G  +P ++ RP                 +YVVG
Sbjct: 304 RLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPF--------AVNCYGNRVYVVG 355

Query: 337 AGLDVAIGTVSPSPAIHGGDDERVDWEVVKGPAEFAGLAPCNAQVLYA 384
             L +A+G +  S      +   V WEVV+ P  +A + P N+Q+L+A
Sbjct: 356 RNLHLAVGNIWQSE-----NKFAVRWEVVESPERYADITPSNSQILFA 398



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,703,221
Number of extensions: 178952
Number of successful extensions: 509
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 3
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)