BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0646500 Os06g0646500|AK071267
         (225 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13450.1  | chr5:4310558-4311941 REVERSE LENGTH=239            208   2e-54
AT4G09650.1  | chr4:6100799-6101503 FORWARD LENGTH=235             47   7e-06

>AT5G13450.1 | chr5:4310558-4311941 REVERSE LENGTH=239
          Length = 238

 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
           R +A+  A+ T  ++KVP AL G  GN+AS L++ A K N L+K+ET++ +++EA K +P
Sbjct: 34  RTYATASAQTTA-NVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAP 92

Query: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
           +F+QF KD SVP+ TR+ AI +   +A F++ TKNFL++LA+NG+LK++D I ++F+ LT
Sbjct: 93  IFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLT 152

Query: 143 MAHKGEVKVLVRTVIXXXXXXXXXXXXTLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202
            AH+G+VKVLV TVI            TLQ+I+G  K I +EQKID SI GGL+++F QK
Sbjct: 153 NAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQK 212

Query: 203 VFDMSIKTRAKQMEMFLRQPLD 224
           V DMSI+TRA+QME  LR+P+D
Sbjct: 213 VLDMSIRTRAQQMERLLREPVD 234



>AT4G09650.1 | chr4:6100799-6101503 FORWARD LENGTH=235
          Length = 234

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 46  GTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEI 105
              +YA AL   A + + ++   T+I  + E     P    F  + ++  E + + I +I
Sbjct: 51  AASSYAMALADVAKRNDTMELTVTDIEKL-EQVFSDPQVLNFFANPTITVEKKRQVIDDI 109

Query: 106 FAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLTMAHKGEVKVL-VRTVIXXXXXXX 164
              +     T NFL VL D  R+  +  I + F +L      + ++  VR+V+       
Sbjct: 110 VKSSSLQSHTSNFLNVLVDANRINIVTEIVKEF-ELVYNKLTDTQLAEVRSVVKLEAPQL 168

Query: 165 XXXXXTLQDILGKNKTILIEQKIDYSIMGGLVIQFGQ---KVFDMSIKTRAKQME 216
                 +Q + G  K + ++  ID S++ G  I++G+   K+ DMS+K   KQ+E
Sbjct: 169 AQIAKQVQKLTGA-KNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVK---KQLE 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,029,868
Number of extensions: 143539
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)