BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0645600 Os06g0645600|Os06g0645600
(583 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G12400.1 | chr2:5005144-5008140 REVERSE LENGTH=542 285 5e-77
AT2G25270.1 | chr2:10759779-10762358 FORWARD LENGTH=546 276 2e-74
AT1G71110.1 | chr1:26818244-26820852 FORWARD LENGTH=558 223 2e-58
AT1G80540.1 | chr1:30281638-30284258 REVERSE LENGTH=539 201 7e-52
>AT2G12400.1 | chr2:5005144-5008140 REVERSE LENGTH=542
Length = 541
Score = 285 bits (729), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 192/360 (53%), Gaps = 7/360 (1%)
Query: 159 FAVSLALLLVFTAVAIIGCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSGFIXX 218
+A+SL LL+ FT AIIGC+ LY GQGKFH STT TL +VV+Q++ +LR S ++
Sbjct: 143 YALSLILLISFTIAAIIGCVFLYTGQGKFHASTTDTLDYVVSQANLTSENLRNVSDYLNA 202
Query: 219 XXXXXXXXXTLPADLQGKXXXXXXXXXXXXXXXXXXTTTNSRKIRTALETIRTILIXXXX 278
LP D+ T N KI+ L+ +R L+
Sbjct: 203 AKKVDVQSSILPQDVLSSIDNIQGKINSSATTLSVKTMENQDKIQNVLDIMRLALVIIAA 262
Query: 279 XXXXXXXXXXXFSLCGLKSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAMDEWV 338
S+ GL+ LVYTLVI GWILVT TF+L G FLLLHN VGDTCVAMD+WV
Sbjct: 263 VMLFLAFIGFLLSIFGLQCLVYTLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWV 322
Query: 339 LHPQGHTALDDILPCVDAAATSDALRRSKEVNYQIVSXXXXXXXXXXXXXXXXXXXXXXX 398
+P HTALDDILPCVD A + L R+K V YQ+V+
Sbjct: 323 QNPTAHTALDDILPCVDNATARETLTRTKLVTYQLVN---LLDNAISNMTNRNFPPQFRP 379
Query: 399 XXYRQSGTPVPLLCNPYNGDLSDRXXXXXXXXXXXXXXXWRGYVCRATGAAPSSEVCATT 458
Y QSG +PLLCNP+N DLSDR W+ + C+ P + C+T
Sbjct: 380 LYYNQSGPLMPLLCNPFNADLSDRQCQPGQVHLNNATEVWKNFTCQI--VTPGT--CSTP 435
Query: 459 GRLTPTMYDQMVAAANASAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRRHSGRVY 518
GRLTP +Y QM AA N S GL +YGP LADL C +VR F + HCPGL+R++ +Y
Sbjct: 436 GRLTPKLYSQMAAAVNVSYGLYKYGPFLADLQGCDFVRSTFTDIERDHCPGLKRYTQWIY 495
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 37 SSSAFVLAAAQTRRKDPLRGLRYYTGGWNISDKHYL 72
+S+ +LAA +TRRKDP + YTGGWNIS+ HYL
Sbjct: 61 ENSSLILAAKRTRRKDPADNFKLYTGGWNISNSHYL 96
>AT2G25270.1 | chr2:10759779-10762358 FORWARD LENGTH=546
Length = 545
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 193/360 (53%), Gaps = 7/360 (1%)
Query: 159 FAVSLALLLVFTAVAIIGCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSGFIXX 218
+ VSL LL+FT +AIIGC++LY GQ +++ STT TL +V++Q+D ++ LR S ++
Sbjct: 148 YVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQADSTISQLRAISDYLAS 207
Query: 219 XXXXXXXXXTLPADLQGKXXXXXXXXXXXXXXXXXXTTTNSRKIRTALETIRTILIXXXX 278
LPA++Q + +T +S IR L+++R LI
Sbjct: 208 AKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHIRHFLDSVRVALIVVSI 267
Query: 279 XXXXXXXXXXXFSLCGLKSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAMDEWV 338
S+ G++ +VYTLVI GWILVT TFILSGTFL+LHNA DTCVAM EWV
Sbjct: 268 VMLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLVLHNATADTCVAMSEWV 327
Query: 339 LHPQGHTALDDILPCVDAAATSDALRRSKEVNYQIVSXXXXXXXXXXXXXXXXXXXXXXX 398
P +TALD+ILPC D A + L RS+EV Q+V
Sbjct: 328 ERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVE---LINTVITNVSNINFSPVFVP 384
Query: 399 XXYRQSGTPVPLLCNPYNGDLSDRXXXXXXXXXXXXXXXWRGYVCRATGAAPSSEVCATT 458
Y QSG +PLLCNP+N DL+DR W +VC+ + + C TT
Sbjct: 385 MYYNQSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQVS----QNGTCTTT 440
Query: 459 GRLTPTMYDQMVAAANASAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRRHSGRVY 518
GRLTP +Y QM + N S GL + P L L DCSY ++ F+ +T HCPGL+R+ VY
Sbjct: 441 GRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPGLQRYGYWVY 500
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 43 LAAAQTRRKDPLRGLRYYTGGWNISDKHYLALAMRSPWCSTVLPA-WFL 90
LAA +T RKDPL G YTGGWNIS++HY A + VL A WFL
Sbjct: 72 LAAQRTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFL 120
>AT1G71110.1 | chr1:26818244-26820852 FORWARD LENGTH=558
Length = 557
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 169/353 (47%), Gaps = 8/353 (2%)
Query: 161 VSLALLLVFTAVAIIGCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSGFIXXXX 220
+ LL+VFT VA +GCI+L GQ KFH TL++VVNQSD V L+ + ++
Sbjct: 146 ICFILLIVFTCVAAVGCILLSVGQDKFHTEAMHTLKYVVNQSDYTVEILQNVTQYLSLAK 205
Query: 221 XXXXXXXTLPADLQGKXXXXXXXXXXXXXXXXXXTTTNSRKIRTALETIRTILIXXXXXX 280
+P+D+ G+ TT N+ KI+ +R+ LI
Sbjct: 206 TINVTQIVIPSDVMGEIDKLNVNLNTAAVTLGETTTDNAAKIKRVFYAVRSALITVATVM 265
Query: 281 XXXXXXXXXFSLCGLKSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAMDEWVLH 340
S+ + +V+ V+ GWILV TF+L G FL+L+NA+ DTCVAM EWV +
Sbjct: 266 LILSFVGLLLSVLRHQHVVHIFVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKEWVDN 325
Query: 341 PQGHTALDDILPCVDAAATSDALRRSKEVNYQIVSXXXXXXXXXXXXXXXXXXXXXXXXX 400
P TAL ILPCVD T+ L +SK V IV+
Sbjct: 326 PHAETALSSILPCVDQQTTNQTLSQSKVVINSIVT----VVNTFVYAVANTNPAPGQDRY 381
Query: 401 YRQSGTPVPLLCNPYNGDLSDRXXXXXXXXXXXXXXXWRGYVCRATGAAPSSEVCATTGR 460
Y QSG P+P LC P++ ++ DR W Y C T S +C T GR
Sbjct: 382 YNQSGPPMPPLCIPFDANMEDRQCSPWELSIENASSVWENYKCEVT----PSGICTTVGR 437
Query: 461 LTPTMYDQMVAAANASAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRRH 513
+TP + Q+VAA N S L Y P L DC++VR F ++T+ +CP L R+
Sbjct: 438 VTPDTFGQLVAAVNESYALEHYTPPLLSFRDCNFVRETFMSITSDYCPPLVRN 490
>AT1G80540.1 | chr1:30281638-30284258 REVERSE LENGTH=539
Length = 538
Score = 201 bits (512), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 164/362 (45%), Gaps = 9/362 (2%)
Query: 159 FAVSLALLLVFTAVAIIGCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSGFIXX 218
+ +SL LL+FT A+IG +LY GQ +F+GS T ++V Q+ G + L I
Sbjct: 144 YTLSLVFLLLFTIAAVIGSAMLYTGQNEFYGSVERTFMYIVKQATGVLTKLTSLWDSIQS 203
Query: 219 XXXXXXXXXTL-PADLQGKXXXXXXXXXXXXXXXXXXTTTNS-RKIRTALETIRTILIXX 276
L P + +G + R + AL +R +L
Sbjct: 204 AKDIQLDGHNLFPPEFRGNIDHFNNMIKMSNITYPDRVANQTIRYLTGALNPVRYVLNVI 263
Query: 277 XXXXXXXXXXXXXFSLCGLKSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAMDE 336
FS CGL+ LVY LVI GWILVTAT +LS FL+ HN V DTC+AMD+
Sbjct: 264 AGVMLAVAFLGLLFSFCGLRVLVYLLVILGWILVTATILLSAVFLVFHNVVADTCMAMDQ 323
Query: 337 WVLHPQGHTALDDILPCVDAAATSDALRRSKEVNYQIVSXXXXXXXXXXXXXXXXXXXXX 396
WV P +AL +LPC+D + L +K + V
Sbjct: 324 WVHDPAADSALSQLLPCLDPKTIGETLDITKTMTATAVD---MTNAYTVNVSNHDQFPPN 380
Query: 397 XXXXYRQSGTPVPLLCNPYNGDLSDRXXXXXXXXXXXXXXXWRGYVCRATGAAPSSEVCA 456
+ QSG VPLLCNP + + R ++GY+C+ +C
Sbjct: 381 APFYHNQSGPLVPLLCNPLDQNHKPRPCAPDEVLLANASQVYKGYICQVNAEG----ICT 436
Query: 457 TTGRLTPTMYDQMVAAANASAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRRHSGR 516
T GRLT YDQM+ A N + L YGP LA +ADC++VR F+ +T +CPGL S
Sbjct: 437 TQGRLTQGSYDQMMGAINVAFTLDHYGPFLASIADCTFVRDTFRDITTKNCPGLSITSQW 496
Query: 517 VY 518
+Y
Sbjct: 497 IY 498
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,419,070
Number of extensions: 210775
Number of successful extensions: 568
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 6
Length of query: 583
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 479
Effective length of database: 8,255,305
Effective search space: 3954291095
Effective search space used: 3954291095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)