BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0644800 Os06g0644800|AK109442
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35080.1  | chr5:13354552-13356725 REVERSE LENGTH=283          243   9e-65

>AT5G35080.1 | chr5:13354552-13356725 REVERSE LENGTH=283
          Length = 282

 Score =  243 bits (620), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 124/248 (50%), Positives = 167/248 (67%), Gaps = 11/248 (4%)

Query: 27  DQIFTSS-GAPFGRNSREPRYHVEFHPVDAPFNPENGQESVPMTSHVGKHYTCFLPVEET 85
           DQIF +     F RN+REP+Y +EF P D+PF+P +  ES+ M    G  + C+LP EE 
Sbjct: 24  DQIFPAHLVGTFSRNNREPKYKIEFLPEDSPFHPGDNLESMVMLDKHGNRFLCYLPKEEK 83

Query: 86  KTMK-SIIPQNATNVIIESERRVKPKDPDELLEILKDQCFYRHEGWWSYEFCYYGKIRQV 144
            T   +   QN + V++E+++ VK K PDELL+ L ++C +R EGWWSYEFC+   +RQ+
Sbjct: 84  ATSGWTSSQQNISTVMMETQQLVKLKTPDELLQPLSEKCLFRQEGWWSYEFCHQKYVRQL 143

Query: 145 HVEGE-KVIQEYVLGEYDADATDAYYENQTSDSADEDDNLIDTSKRYHVHLYTNGTVCDL 203
           HVE E K++QE+ LG +D +AT A+  NQT   A       D S+RYH H+YTNGT CDL
Sbjct: 144 HVEDENKIVQEFFLGTFDPEATAAF--NQTVSDAS-----TDASQRYHSHVYTNGTTCDL 196

Query: 204 TDMPRETEVRFVCSEPTVVISSIKEISSCKYVLTVQSPMLCKNPLFQQEK-RTLSIHCNE 262
           T  PRE EVRFVC+E   +++SI E+S+CKY LTVQ P LCK+PLFQ EK  + +IHCN 
Sbjct: 197 TGSPREVEVRFVCAETRAMVTSITELSTCKYALTVQCPTLCKHPLFQLEKPVSHTIHCNA 256

Query: 263 LLAEAEAT 270
           +  E +AT
Sbjct: 257 IPVEEDAT 264



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,546,124
Number of extensions: 287232
Number of successful extensions: 697
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)