BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0644100 Os06g0644100|AK059777
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25310.1  | chr2:10777436-10779123 REVERSE LENGTH=211          229   7e-61
AT4G32130.1  | chr4:15520345-15522477 REVERSE LENGTH=203          229   1e-60

>AT2G25310.1 | chr2:10777436-10779123 REVERSE LENGTH=211
          Length = 210

 Score =  229 bits (584), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 146/179 (81%), Gaps = 4/179 (2%)

Query: 27  GSAEGHTIAGRIKIDAASAIAKGFGLPAKTSNTKVILNGGQRVTFARPDGYFAFHNVPAG 86
           GS + +TI GR+KI  ++ I    G  AK SN KVILNGGQ++TF RPDGYF FH VPAG
Sbjct: 34  GSEDSYTITGRVKIPPSNVI----GHIAKFSNVKVILNGGQKITFLRPDGYFTFHEVPAG 89

Query: 87  THLIEVSSLGYLFSPVRVDISARNPGHIQAALTENRRVLNELVLEPLREEQYYEKREPFS 146
           THLIEVS++GY FSPVRVD+SAR+ G +QA LTE RR L ELVLEPL+EEQYYE REPF+
Sbjct: 90  THLIEVSAMGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLKEEQYYEIREPFN 149

Query: 147 IMSLLKSPMGMMLGFMVIMVFVMPKMMENIDPEEIKQAQEQMRNSPVPSFSGLLARANS 205
           IMS++KSPMG+M+GFMV++VF+MPK+MENIDPEE+KQAQE+MR   VPS + LL  A +
Sbjct: 150 IMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVPSLTSLLPGAGA 208



>AT4G32130.1 | chr4:15520345-15522477 REVERSE LENGTH=203
          Length = 202

 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 142/174 (81%), Gaps = 4/174 (2%)

Query: 27  GSAEGHTIAGRIKIDAASAIAKGFGLPAKTSNTKVILNGGQRVTFARPDGYFAFHNVPAG 86
           GS + +TI GR+++ A++ I    G  AK SN KVILNGGQ VTF RPDGYF FH VPAG
Sbjct: 29  GSEDSYTITGRVRVPASTVI----GHAAKFSNIKVILNGGQHVTFLRPDGYFTFHKVPAG 84

Query: 87  THLIEVSSLGYLFSPVRVDISARNPGHIQAALTENRRVLNELVLEPLREEQYYEKREPFS 146
           THLIEV +LGY FSPVRVD+SAR+ G +QA LTE RR L ELVLEPLR EQYYE REPFS
Sbjct: 85  THLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFS 144

Query: 147 IMSLLKSPMGMMLGFMVIMVFVMPKMMENIDPEEIKQAQEQMRNSPVPSFSGLL 200
           +MS++KSPMG+M+GFMV++VF+MPK+MENIDPEE+K AQEQMR+  VPS + LL
Sbjct: 145 VMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVPSLTSLL 198



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,710,700
Number of extensions: 143357
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)