BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0643800 Os06g0643800|AK071732
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11110.1 | chr5:3536426-3540901 FORWARD LENGTH=1048 192 6e-50
AT5G20280.1 | chr5:6844994-6849997 REVERSE LENGTH=1044 186 9e-48
AT4G10120.1 | chr4:6315033-6319785 FORWARD LENGTH=1051 124 2e-29
AT1G04920.1 | chr1:1391674-1395756 REVERSE LENGTH=1063 118 1e-27
>AT5G11110.1 | chr5:3536426-3540901 FORWARD LENGTH=1048
Length = 1047
Score = 192 bits (489), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
WGGE LRK L++W SSV E++ + +++ ED S+ YCL+FKV +P +PP+KEL+KL
Sbjct: 863 WGGESLRKTLIRWISSVEEKKKTKKGEILVEDESSSTNYCLSFKVKDPALMPPMKELRKL 922
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
MR Q+LRC+A+Y RL+VIP+ ASRS+ALRYL VRWGI+L N+VV VG++GD+DYE
Sbjct: 923 MRNQALRCNAVYCQNGARLNVIPVLASRSQALRYLLVRWGIDLSNMVVFVGDSGDTDYEG 982
Query: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
L GG+HKTVILKG + R YP++DV L+SPNI + G D ++ AL++L
Sbjct: 983 LLGGIHKTVILKG-LASDLREQPGNRSYPMEDVTPLNSPNITEAKECGRDAIKVALEKLG 1041
Query: 181 I 181
I
Sbjct: 1042 I 1042
>AT5G20280.1 | chr5:6844994-6849997 REVERSE LENGTH=1044
Length = 1043
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
WGGEGLRK L++WASS+ E++ ++Q++ S+ YC F V P +PP++EL+KL
Sbjct: 864 WGGEGLRKTLIRWASSLNEKKADNDEQIVTLAEHLSTDYCYTFTVKKPAAVPPVRELRKL 923
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
+RIQ+LRCH +Y+ TR++VIP+ ASR +ALRYL VRWGI++ + V VGE+GD+DYE
Sbjct: 924 LRIQALRCHVVYSQNGTRINVIPVLASRIQALRYLFVRWGIDMAKMAVFVGESGDTDYEG 983
Query: 121 LFGGLHKTVILKGEFNTSANRIHSVRRYPLQDVVALDSPNIIGIEGYGTDDMRSALKQLD 180
L GGLHK+V+LKG ++ +H+ R YPL DV++ +S N+ + D+R ALK+L+
Sbjct: 984 LLGGLHKSVVLKGVSCSAC--LHANRSYPLTDVISFESNNV--VHASPDSDVRDALKKLE 1039
Query: 181 I 181
+
Sbjct: 1040 L 1040
>AT4G10120.1 | chr4:6315033-6319785 FORWARD LENGTH=1051
Length = 1050
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 7/184 (3%)
Query: 1 WGGEGLRKYLVKWASSVVERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKELQKL 60
W GE +R +++ + + I E ST C A V + +L++
Sbjct: 872 WPGESIRSVILRLICT-----EPAAEDDITEYASSCSTRCYAISVKQGVKTRRVDDLRQR 926
Query: 61 MRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSDYEE 120
+R++ LRC+ +Y H ATRL+VIP+ ASR +ALRYLS+RWGI++ V +GE GD+DYE+
Sbjct: 927 LRMRGLRCNIVYTHAATRLNVIPLCASRIQALRYLSIRWGIDMSKTVFFLGEKGDTDYED 986
Query: 121 LFGGLHKTVILKGEFNTSANR-IHSVRRYPLQDVVALDSPNIIGI-EGYGTDDMRSALKQ 178
L GGLHKT+ILKG + + + + S + +D V +SPNI + E G+ ++ S L+
Sbjct: 987 LLGGLHKTIILKGVVGSDSEKLLRSEENFKREDAVPQESPNISYVKENGGSQEIMSTLEA 1046
Query: 179 LDIR 182
I+
Sbjct: 1047 YGIK 1050
>AT1G04920.1 | chr1:1391674-1395756 REVERSE LENGTH=1063
Length = 1062
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 1 WGGEGLRKYLVKWASSVV---ERRGRIEKQVIFEDPEHSSTYCLAFKVVNPNHLPPLKEL 57
WG EGL+ + K ++ E R + +I ED S+++C+A+ + + + + + +L
Sbjct: 876 WGMEGLKNTVWKLMNTTAVGGEARNKGSPSLIQEDQASSNSHCVAYMIKDRSKVMRVDDL 935
Query: 58 QKLMRIQSLRCHALYNHGATRLSVIPIHASRSKALRYLSVRWGIELQNVVVLVGETGDSD 117
++ +R++ LRCH +Y +TR+ ++P+ ASRS+ALRYL VRW + + N+ V+VG+ GD+D
Sbjct: 936 RQKLRLRGLRCHPMYCRNSTRMQIVPLLASRSQALRYLFVRWRLNVANMYVVVGDRGDTD 995
Query: 118 YEELFGGLHKTVILKGEFNTSANRIHSVRRYPLQ-DVVALDSPNI 161
YEEL G HKTVI+KG ++ + +R L+ D+V +SP I
Sbjct: 996 YEELISGTHKTVIVKGLVTLGSDAL--LRSTDLRDDIVPSESPFI 1038
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,023,207
Number of extensions: 155464
Number of successful extensions: 357
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)