BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0639000 Os06g0639000|AK065890
         (303 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34100.1  | chr4:16330590-16334864 FORWARD LENGTH=1109         436   e-122
AT4G32670.1  | chr4:15759527-15762847 REVERSE LENGTH=861          159   2e-39

>AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109
          Length = 1108

 Score =  436 bits (1120), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 242/295 (82%), Gaps = 3/295 (1%)

Query: 1    IVIPISLGRLVFEAIPRLPITHGIKCNDLFSFSIGCYIIWSAAAGTRYAIDYIRSRRLAF 60
            IV+P+SLGR +F AIP LPITHGIKCNDL++F IG Y  W+  +G RYAI++++S+R + 
Sbjct: 815  IVVPVSLGRALFSAIPILPITHGIKCNDLYAFVIGTYAFWTTISGARYAIEHVKSKRTSV 874

Query: 61   LVQQICKWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWAL 120
            L+ QI KWC IV KSS LL+IW+F+IPVLIGLLFELLVIVPMRVP+DESPVFLLYQDWAL
Sbjct: 875  LLNQIWKWCGIVFKSSVLLAIWVFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWAL 934

Query: 121  GLIFLKIWTRLVMLDQMAPLVDESWRTKFERVREDGFSRLRGLWVLHEIIMPIVTKLLTA 180
            GLIFLKIWTRLVMLD M P+VD+SWR KFERVREDGFSRL+GLWVL EI+ PIV KLLTA
Sbjct: 935  GLIFLKIWTRLVMLDHMLPIVDDSWRAKFERVREDGFSRLQGLWVLREIVFPIVMKLLTA 994

Query: 181  LCVPYVLARGVFPVLGYPLIVNSAVYRFAWLGCLIFSALFFCGKRFHVWFTNLHNSIRDD 240
            LCVPYVLARGVFP+LGYPL+VNSAVYRFAW+GCL  S   FC KR HVWF NLHNSIRDD
Sbjct: 995  LCVPYVLARGVFPMLGYPLVVNSAVYRFAWIGCLSVSLFCFCAKRCHVWFRNLHNSIRDD 1054

Query: 241  RYLIGRRLHNFGEDSLHSSEPGTTTASDDDEHEQALIPRDQEGELGLRFRRHIMR 295
            RYLIGRRLHNFGE +L +        S +D  +  LI R+ + + GLR RR I +
Sbjct: 1055 RYLIGRRLHNFGEAALANQ---NQNQSSEDAGDGVLIGREGDVDNGLRLRRAIQQ 1106



>AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861
          Length = 860

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 4/254 (1%)

Query: 1   IVIPISLGRLVFEAIPRLPITHGIKCNDLFSFSIGCYIIWSAAAGTRYAIDYIRSRRLAF 60
           + +PI +GR  F +I    ++ G+K +DL +F IG  I+      T +  D+  + R   
Sbjct: 609 MALPILVGRAFFHSISFFMLSFGLKHDDLCAFWIGFCILRGIYIITCFVYDHFITGRTDL 668

Query: 61  LVQQICKWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWAL 120
           L+  +     + +++  L SIWI VIP ++GLL +L++I+P +VP+ ESPV+ L  DW +
Sbjct: 669 LLNHVL----MFIRNVLLFSIWISVIPGVLGLLIDLMIIIPSQVPLGESPVYNLLHDWLI 724

Query: 121 GLIFLKIWTRLVMLDQMAPLVDESWRTKFERVREDGFSRLRGLWVLHEIIMPIVTKLLTA 180
           G++ L IW  L ML ++      +WR K +R+R    +RL   W++ ++I  I+  LL  
Sbjct: 725 GVVVLHIWIFLTMLTRINCFATVAWREKLQRIRSVTINRLPFTWLIRDVIGSIIVSLLFT 784

Query: 181 LCVPYVLARGVFPVLGYPLIVNSAVYRFAWLGCLIFSALFFCGKRFHVWFTNLHNSIRDD 240
           LCVPYV+   +FP+LG+   VN  V RF W   L    ++F  K        LH    D+
Sbjct: 785 LCVPYVVVNSLFPILGFSSAVNLTVQRFIWPAILALIPIWFSVKLIRDLILYLHKLEFDN 844

Query: 241 RYLIGRRLHNFGED 254
           RY +G RL +F ED
Sbjct: 845 RYKVGERLVDFTED 858



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.145    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,848,556
Number of extensions: 284541
Number of successful extensions: 784
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)