BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0630300 Os06g0630300|AK107079
         (179 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04614.1  | chr4:2327308-2327914 REVERSE LENGTH=177            100   5e-22

>AT4G04614.1 | chr4:2327308-2327914 REVERSE LENGTH=177
          Length = 176

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 47  PDAMSKKKKPGGVDFNALSRHGYRGGPSVLTVPPPKVEPNWSWSTGKDRNDKEDQXXXXX 106
           P A   KK     D+ +L +HGY+    +  +P P  + +WSW+TGKD+     Q     
Sbjct: 50  PIARFAKKDKKAFDYESLQQHGYKA-VGLSDIPAPMEKQDWSWTTGKDK-----QRVEEV 103

Query: 107 XXXXXXXXXXXXXKLIGVRNPQPRQMEKENKDASFSQKEKRKRDRGQASRGKNYVEEEKR 166
                         + G       Q+  + K+ SFSQKEK+KRD GQASRGKNYVEEEKR
Sbjct: 104 KESYQEREATRAAAVTGGETIANAQLRNDRKNLSFSQKEKKKRDLGQASRGKNYVEEEKR 163

Query: 167 LLRGSGVYSGFDT 179
            LR SGVYSGFD+
Sbjct: 164 QLRESGVYSGFDS 176



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,015,752
Number of extensions: 158624
Number of successful extensions: 550
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 108 (46.2 bits)