BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0622300 Os06g0622300|AK099075
(461 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17410.1 | chr2:7559869-7563474 FORWARD LENGTH=787 418 e-117
AT1G76510.3 | chr1:28708681-28712498 REVERSE LENGTH=494 366 e-101
AT1G20910.1 | chr1:7277209-7280635 REVERSE LENGTH=399 364 e-101
AT1G04880.1 | chr1:1376106-1378264 REVERSE LENGTH=449 55 9e-08
AT1G76110.1 | chr1:28555287-28557465 REVERSE LENGTH=339 54 2e-07
>AT2G17410.1 | chr2:7559869-7563474 FORWARD LENGTH=787
Length = 786
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/315 (65%), Positives = 246/315 (78%), Gaps = 7/315 (2%)
Query: 146 ASNSFMFDYSCGGDDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVT 205
A SF+ D + G++SGTEE+Q+AFMKEL+ F+RE+ M+FKPPKFYGEGLNCLKLWR VT
Sbjct: 476 AKRSFLLDDASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVT 535
Query: 206 GLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAAS 265
LGGYD+VT KLWRQVGESF+PPKTCTTVSWTFR FYEKALLEYE+HK+ GE Q+
Sbjct: 536 RLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLP 595
Query: 266 NLTERITSESQVGIHASGSGRARRESATRAMQGWHSQRLLGNGEIADPIIKDKGTVSVLK 325
E + ++Q ASGSGRARR++A+RAMQGWHSQRL GNGE++DP IKDK V K
Sbjct: 596 LELEPMNIDNQ----ASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQK 651
Query: 326 KDKTPKSS-GSAKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVKINVRRTKDCY 384
++K ++ G KRKR + L D V+D+GPPADWVKINV+RT+DC+
Sbjct: 652 REKQIGTTPGLLKRKRAAEHGAKNAIHVSKSML--DVTVVDVGPPADWVKINVQRTQDCF 709
Query: 385 EVYALVPGLLREEVHVQSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPSRIDPHQTSAV 444
EVYALVPGL+REEV VQSDPAGRL+++GEPE NPWG TPFKKV+SLP+RIDPH TSAV
Sbjct: 710 EVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAV 769
Query: 445 VTLHGQLFVRAPFEQ 459
VTL+GQLFVR P EQ
Sbjct: 770 VTLNGQLFVRVPLEQ 784
>AT1G76510.3 | chr1:28708681-28712498 REVERSE LENGTH=494
Length = 493
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/325 (58%), Positives = 232/325 (71%), Gaps = 28/325 (8%)
Query: 159 DDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKL 218
D++G ++Q AF+KE+E F +E +EFK PKFYG+ LNCLKLWR V LGGYD VT+ KL
Sbjct: 137 DEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKL 196
Query: 219 WRQVGESFKPPKTCTTVSWTFRNFYEK-----------------------ALLEYEKHKI 255
WRQVGESF PPKTCTTVSWTFR FYEK ALLEYEKH
Sbjct: 197 WRQVGESFHPPKTCTTVSWTFRIFYEKVNFIFGLSTEYALILMRLYLFSLALLEYEKHLR 256
Query: 256 ETGEFQVAASNLTERITSESQVGIH-ASGSGRARRESATRAMQGWHSQRLLGNGEIADPI 314
+ GE + S E + H ASGSGR RR++A RAMQGWHSQRLLG+GE+ +PI
Sbjct: 257 QNGELNLPGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPI 316
Query: 315 IKDKGTVSVLKKDKTPKSSGSAKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVK 374
+K+KG S K K K+ G K+K T + D + ++ +K Q+ + V+D+GPPADWVK
Sbjct: 317 VKEKGLNST-PKQKNLKNIGVQKQKTTTGM--DLVFSHESEK-QSTAEVIDVGPPADWVK 372
Query: 375 INVRRTKDCYEVYALVPGLLREEVHVQSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPS 434
INVR TKDC+E++ALVPGLLREEV VQSDPAGRL++ G+PEQLDNPWG+TPFKKV++ P+
Sbjct: 373 INVRETKDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPA 432
Query: 435 RIDPHQTSAVVTLHGQLFVRAPFEQ 459
RIDP TSAVV+LHG+LFVR PFE
Sbjct: 433 RIDPLHTSAVVSLHGRLFVRVPFEH 457
>AT1G20910.1 | chr1:7277209-7280635 REVERSE LENGTH=399
Length = 398
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/304 (59%), Positives = 232/304 (76%), Gaps = 5/304 (1%)
Query: 157 GGDDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSC 216
G D++GT EQ AF++E+E FY+E +EFKPPKFYG+ LN LKLWR V LGGY+ VT+
Sbjct: 99 GTDEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTN 158
Query: 217 KLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAASNLTERITSESQ 276
KLWRQVGESF PPKTCTTVS+TFRNFYEKALLEYEK GE + S L + E +
Sbjct: 159 KLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKE 218
Query: 277 VGIH-ASGSGRARRESATRAMQGWHSQRLLGNGEIADPIIKDKGTVSVLKKDKTPKSSGS 335
H SGSGRARR+SA RAMQGWH+QRL+G+GE+ P +KDKG +S K K KS G
Sbjct: 219 PSSHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPKHKKL-KSIGL 277
Query: 336 AKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVKINVRRTKDCYEVYALVPGLLR 395
K K+ ++ D +V + DK Q + V+D+GP ADWVKINV+ +KD +E++ALVPGLLR
Sbjct: 278 QKHKQQTSM--DHVVTNEADK-QLAAEVVDVGPVADWVKINVKESKDSFEIFALVPGLLR 334
Query: 396 EEVHVQSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRA 455
+EV +QSDPAG++++TG+PEQLDNPWG+TPFKK++ L +RIDP TSAV+++HG+LF+R
Sbjct: 335 KEVRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRV 394
Query: 456 PFEQ 459
PFEQ
Sbjct: 395 PFEQ 398
>AT1G04880.1 | chr1:1376106-1378264 REVERSE LENGTH=449
Length = 448
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 170 FMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPP 229
FM LER + +F P G L+ KL+ +VT GG +++ + + W++V +F P
Sbjct: 35 FMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFP 94
Query: 230 KTCTTVSWTFRNFYEKALLEYEK 252
T T S+ R +Y L YE+
Sbjct: 95 PTATNASYVLRKYYFSLLNNYEQ 117
>AT1G76110.1 | chr1:28555287-28557465 REVERSE LENGTH=339
Length = 338
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 165 EEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGE 224
++ + F L RF+ +F P G+ L+ L+ +VT GGY++V K WR+VG
Sbjct: 39 KDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGG 98
Query: 225 SFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETG 258
F+ T T+ S+ R Y L YE+ + T
Sbjct: 99 VFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTA 132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,767,631
Number of extensions: 489688
Number of successful extensions: 1370
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,310,137
Effective search space: 2983339183
Effective search space used: 2983339183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)