BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0612900 Os06g0612900|Os06g0612900
(717 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12960.1 | chr5:4097788-4101518 FORWARD LENGTH=866 762 0.0
AT5G12950.1 | chr5:4093117-4096806 FORWARD LENGTH=862 759 0.0
>AT5G12960.1 | chr5:4097788-4101518 FORWARD LENGTH=866
Length = 865
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/734 (52%), Positives = 490/734 (66%), Gaps = 70/734 (9%)
Query: 1 MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA 60
MWASTHN TL KM A+V AL +CQ GTGYLSAFP+ FFDRFEAI VWAPYYTIHK
Sbjct: 185 MWASTHNETLKAKMTALVSALAECQQKYGTGYLSAFPSSFFDRFEAITHVWAPYYTIHK- 243
Query: 61 RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV 120
I+ GL+DQ+ +AGN +AL M MADYF GRV++V
Sbjct: 244 -------------------------ILAGLVDQYKLAGNTQALKMATGMADYFYGRVQNV 278
Query: 121 IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS 180
I++Y++ERHW SLNEETGGMNDVLYQLY+IT+D ++L LAHLFDKPCFLG+LA+QAD +S
Sbjct: 279 IKKYSVERHWLSLNEETGGMNDVLYQLYSITRDSKYLFLAHLFDKPCFLGVLAIQADDIS 338
Query: 181 GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKHX 240
GFHANTHIP+V+G Q RYE+TGD L+KEI FFMDIVN+SHSYATGGTSV EFW +PK
Sbjct: 339 GFHANTHIPIVVGSQQRYEITGDLLHKEIPMFFMDIVNASHSYATGGTSVKEFWQDPKRM 398
Query: 241 XXXXXXXXXXSCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM 300
SCTTYNMLKVSR+LFRWTKE++YADYYERAL NGVL IQRG DPG MIYM
Sbjct: 399 ATTLQTENEESCTTYNMLKVSRNLFRWTKEVSYADYYERALTNGVLGIQRGTDPGRMIYM 458
Query: 301 LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS 360
LP G G SKAV+YHGWGT Y+SFWCCYGTGIESFSKLGDSIYF++ G P LY+ QYI S
Sbjct: 459 LPLGKGVSKAVTYHGWGTPYDSFWCCYGTGIESFSKLGDSIYFQEDGATPALYVTQYISS 518
Query: 361 TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTN-GQYATLNVRIPSWTSMNGAKAT 419
+ +W++AGL+++Q+V P+ S D Y++V+ ++S++K + +TLN+RIP WT+ GAK +
Sbjct: 519 SLDWKSAGLSISQKVNPVVSWDPYMRVTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVS 578
Query: 420 LNDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFL 479
LN + L + + G FL+I ++W SG D + ++ P+++RTEAIKDDRP+ ASL AIL+GP+L
Sbjct: 579 LNGRPLNVPTSGNFLSIKQKWKSG-DQVTMELPMSIRTEAIKDDRPEYASLQAILYGPYL 637
Query: 480 LAGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAML 539
LAG T+ DW T A +WITP+P + NS LVTL+Q+SG + +LS N T + M
Sbjct: 638 LAGHTSMDWSITTQA---KAGNWITPIPETLNSHLVTLSQQSGNISYVLSNSNQT-IIMK 693
Query: 540 ERPEGAGGTDAAVRATFRVVPPGSXXXXXXXXXXXXXXXXXXXKVAAATIEPFGLPGTAV 599
PE GT AV ATFR+V S + +EPF P
Sbjct: 694 VSPE--PGTQDAVSATFRLVTDDSKHPISSPEGLIG---------SLVMLEPFDFP---- 738
Query: 600 SNGLAVVRAGNSSSTL------------FNVAPGLDGKPGSVSLELGSKPGCFLVAG--- 644
G+ V +A +SS T+ F + GLDGKPGSVSL L SK GCF+ +
Sbjct: 739 --GMIVKQATDSSLTVQASSPSDKGSSSFRLVSGLDGKPGSVSLSLESKKGCFVYSDQTL 796
Query: 645 -AGAKVHVGCRTRGXXXXXXXXXXXXXXXXXXXXPLRRYHAISFFASGVRRSFLLEPLFT 703
G K+ + C + + +Y+ +SF SG +R+F+L PLF+
Sbjct: 797 KQGTKLRLECGSAATDEKFKQAASFSLKTG-----MNQYNPMSFVMSGTQRNFVLSPLFS 851
Query: 704 LRDEFYTIYFNLAA 717
LRDE Y +YF++ A
Sbjct: 852 LRDETYNVYFSVQA 865
>AT5G12950.1 | chr5:4093117-4096806 FORWARD LENGTH=862
Length = 861
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/726 (52%), Positives = 489/726 (67%), Gaps = 58/726 (7%)
Query: 1 MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA 60
MWASTHN TL KM+A+V AL +CQ +GTGYLSAFP+ FFDRFEAI PVWAPYYTIHK
Sbjct: 181 MWASTHNDTLKEKMSALVSALSECQQKSGTGYLSAFPSSFFDRFEAITPVWAPYYTIHK- 239
Query: 61 RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV 120
I+ GL+DQ+ +AGN +AL M MADYF GRVR+V
Sbjct: 240 -------------------------ILAGLVDQYKLAGNSQALKMATGMADYFYGRVRNV 274
Query: 121 IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS 180
I++Y++ERHW SLNEETGGMNDVLYQLY+IT D ++L+LAHLFDKPCFLG+LA+QAD +S
Sbjct: 275 IRKYSVERHWQSLNEETGGMNDVLYQLYSITGDSKYLLLAHLFDKPCFLGVLAIQADDIS 334
Query: 181 GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKHX 240
GFHANTHIP+V+G Q RYE+TGD L+KEI+ FFMDI N+SHSYATGGTSVSEFW +PK
Sbjct: 335 GFHANTHIPIVVGSQQRYEITGDLLHKEISMFFMDIFNASHSYATGGTSVSEFWQDPKRM 394
Query: 241 XXXXXXXXXXSCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM 300
SCTTYNMLKVSR+LFRWTKE++YADYYERAL NGVL IQRG PG+MIYM
Sbjct: 395 ATALQTENEESCTTYNMLKVSRNLFRWTKEVSYADYYERALTNGVLGIQRGTQPGLMIYM 454
Query: 301 LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS 360
LP G G SKAV+YHGWGT Y+SFWCCYGTGIESFSKLGDSIYF++ G P LY+ QYI S
Sbjct: 455 LPLGKGVSKAVTYHGWGTPYDSFWCCYGTGIESFSKLGDSIYFQEDGATPALYVTQYISS 514
Query: 361 TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTN-GQYATLNVRIPSWTSMNGAKAT 419
+ +W++AGL+++Q+V P+ S D Y++V+ ++S++K + +TLN+RIP WT+ GAK +
Sbjct: 515 SLDWKSAGLSISQKVNPVVSWDPYMRVTFTLSSSKVGVAKESTLNLRIPVWTNSIGAKVS 574
Query: 420 LNDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFL 479
LN + L + + G FL+I ++W SG D + ++ P+++RTEAIKDDRP+ ASL AIL+GP+L
Sbjct: 575 LNGRPLNVPTSGNFLSIKQKWKSG-DQVTMELPMSIRTEAIKDDRPEYASLQAILYGPYL 633
Query: 480 LAGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAML 539
LAG T+ DW T WITP+P + NS LVTL+Q+SG + + S N T + M
Sbjct: 634 LAGHTSRDWSITT---QAKPGKWITPIPETQNSYLVTLSQQSGNVSYVFSNSNQT-ITMR 689
Query: 540 ERPEGAGGTDAAVRATFRVVPPGSXXXXXXXXXXXXXXXXXXXKVAAATIEPFGLPGTAV 599
PE GT AV ATFR+V S +EPF PG V
Sbjct: 690 VSPE--PGTQDAVAATFRLVTDNSKPRISGPEGLIGRL---------VMLEPFDFPGMIV 738
Query: 600 ---SNGLAVVRAGNSS---STLFNVAPGLDGKPGSVSLELGSKPGCFLVAG----AGAKV 649
++ V+A + S ++ F + GLDGK GSVSL L SK GCF+ + G K+
Sbjct: 739 KQATDSSLTVQASSPSDKGASSFRLVSGLDGKLGSVSLRLESKKGCFVYSDQTLKQGTKL 798
Query: 650 HVGCRTRGXXXXXXXXXXXXXXXXXXXXPLRRYHAISFFASGVRRSFLLEPLFTLRDEFY 709
+ C + + +Y+ +SF SG +R+F+L PLF+LRDE Y
Sbjct: 799 RLECGSDATDEKFKEAASFSLKTG-----MHQYNPMSFVMSGTQRNFVLSPLFSLRDETY 853
Query: 710 TIYFNL 715
+YF++
Sbjct: 854 NVYFSV 859
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,448,306
Number of extensions: 567916
Number of successful extensions: 1077
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 2
Length of query: 717
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 611
Effective length of database: 8,200,473
Effective search space: 5010489003
Effective search space used: 5010489003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)