BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0609800 Os06g0609800|AK065646
         (402 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50350.1  | chr5:20498697-20501611 REVERSE LENGTH=585           96   3e-20

>AT5G50350.1 | chr5:20498697-20501611 REVERSE LENGTH=585
          Length = 584

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 180/411 (43%), Gaps = 65/411 (15%)

Query: 8   DSDNDMD-ISHRYGSRGINTKSSNNSLQNSSFHKTAKVN--QSLRKSTSQKDFLXXXXXX 64
           +S++D+D + +   SR + +  S  S QNS   K+A  +  Q LR+S SQ          
Sbjct: 222 NSESDVDQVQYSSSSRDVKSFMSGKS-QNSGSQKSAASDNRQGLRRSFSQNPIKYHDGYS 280

Query: 65  XXXXXITDDEFRDSFHSRN--QKGIRAVYTLEKDRLSNNED-ENALYDVMRKEVRQAVDE 121
                +TDDE +DS  S++  ++ IR VY   K      E   N+ Y   RK    ++D+
Sbjct: 281 SQSSAVTDDEGKDSSSSKHGTERIIRTVYAQNKATPKKRESLGNSGYGSQRK----SLDD 336

Query: 122 IRTQLEKVVTKSEPSEKATSADAQPTQVINELRRSYTSKLEESEMRKXXXXXXXXXXXXR 181
            R                          ++   + Y +KL+ESE RK            R
Sbjct: 337 NRG-------------------------VSTSTKGYATKLQESEERKRELLAEIMLEEQR 371

Query: 182 GHELTKIVKELLPTPKKNMNSERQPXXXXXXXXXXXXXXX--LTEEAEQYFEDFLSNVED 239
           G EL+  +KE+L   + +  +E +P                 LT+EAEQ+ ++F+SN+ED
Sbjct: 372 GRELSVNLKEIL--TENSSEAEEKPLRTRKRSKDRSRRMSMCLTDEAEQFIDEFISNIED 429

Query: 240 TDFSSFDGEXXXXXXXXXXV-VQNTKIETPITLPKVASPVEADGVVLPWLQWETSNDLQT 298
           TDFSS + E          +  Q+++  + +     ++ VE DGV+LPWLQWET +    
Sbjct: 430 TDFSSLEDERSESSSSFGMIKTQSSQSTSALK----STSVEMDGVMLPWLQWETPDVSAA 485

Query: 299 SPCKPKTQXXXXXXXXXXXXXXXXXXXXPGDHDSAAGSKDTLLTRFEEAASRRSSCP-DN 357
             C  K+                         D+++G   ++ T     +SR S  P D+
Sbjct: 486 VACLIKSPHTPNSKSLVWESDTT--------QDASSGRGTSIGT----ISSRGSWSPYDS 533

Query: 358 TQR-----SSFHIDDYMHLRR--SHDLLLERWRQKERIGDGGLILCSRSSI 401
             +      +  ID   +L+R  S D+L E W+ + RI  G L+LCSRS I
Sbjct: 534 VTKPVMPTKTLKIDVAEYLKRPNSSDILNETWKLRHRISSGSLVLCSRSLI 584



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,252,172
Number of extensions: 247701
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)