BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0609700 Os06g0609700|AK067228
(502 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17150.1 | chr4:9638591-9641648 FORWARD LENGTH=503 535 e-152
AT4G14290.1 | chr4:8225547-8230057 REVERSE LENGTH=559 446 e-125
AT3G23540.1 | chr3:8443665-8448070 FORWARD LENGTH=567 444 e-125
>AT4G17150.1 | chr4:9638591-9641648 FORWARD LENGTH=503
Length = 502
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/413 (66%), Positives = 319/413 (77%), Gaps = 11/413 (2%)
Query: 1 MIEQFVNFVIRPPRAEYNPDQYLWEPEFTLAGRKYKRIDLELTNGRDQTLKCSHYVPAVI 60
MI+QF+NFVIRPPRAEY+PDQYLWE EF+L G K KR DLELTN R TL+CSHYVP+
Sbjct: 10 MIDQFINFVIRPPRAEYDPDQYLWEKEFSLGGTKCKRQDLELTNSRGHTLRCSHYVPSSS 69
Query: 61 PDNTALPCVIYCHGNSGCRADANEAAVILLPSNITLFTLDFAGSGLSGGEYVSLGWHEKQ 120
++T LPCVIYCHGNSGCRADANEA ++LLPSNIT+FTLDF+GSGLS G+YVSLGWHEK
Sbjct: 70 REDTPLPCVIYCHGNSGCRADANEAVMVLLPSNITVFTLDFSGSGLSEGDYVSLGWHEKD 129
Query: 121 DLKCAVSFLRNNKEVSCIGLWGRSMGAVTSLLYGAEDPSIAGLVLDSAFSNLYDLMMELV 180
DLK VS+LRN+ +VS IGLWGRSMGAVTSLLYGAEDPSIAG+VLDSAFSNL+DLMMELV
Sbjct: 130 DLKTVVSYLRNSNQVSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLMMELV 189
Query: 181 DVYKIRVPKFTVKMAVQYMRRVIQRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQP 240
DVYKIR+PKFTVK+AVQYMRR+IQ++AKF+IMDL+ V+ +PKTFIPALFGHAS D FIQP
Sbjct: 190 DVYKIRLPKFTVKVAVQYMRRIIQKKAKFNIMDLNCVKVSPKTFIPALFGHASGDKFIQP 249
Query: 241 HHTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSIFFYNVLHPPQFPSVCSNKLDKYY 300
HH+D I + YAGDKN+IKFDGDHNS RPQ YYDSV +FFYNVL PP S S+KL+ YY
Sbjct: 250 HHSDLILKCYAGDKNIIKFDGDHNSSRPQSYYDSVLVFFYNVLRPPPISSSYSSKLESYY 309
Query: 301 NLGAFKVGAGTNESLLYEIINGLRXXXXXXXXXXXXXXNFTNATKSVVELLTERVNQLSI 360
+LG G +ES LYEII+GLR TK ELL+E + +
Sbjct: 310 SLGDVNSATGLDESFLYEIISGLRSACIDVASSSSAPPAPL-TTKPTNELLSEAMPMI-- 366
Query: 361 KTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQNEECCSYTSSNRESWGRC 413
D D + D +HN+ + + + E K Q EE CS+TSSNRESWGRC
Sbjct: 367 --DTDTVLVEDNDHNVDDPE------NFEGKRIDQFEEGCSFTSSNRESWGRC 411
>AT4G14290.1 | chr4:8225547-8230057 REVERSE LENGTH=559
Length = 558
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 250/306 (81%), Gaps = 3/306 (0%)
Query: 2 IEQFVNFVIRPPRAEYNPDQYLWEPEFTLAGRKYKRIDLELTNGRDQTLKCSHYVPAVIP 61
+EQ VNFVIRPPRAEYNP+ L E EF L GR Y+R DLE+ N R L+CSHY+P P
Sbjct: 1 MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDILQCSHYMPVERP 60
Query: 62 DNTALPCVIYCHGNSGCRADANEAAVILLPSNITLFTLDFAGSGLSGGEYVSLGWHEKQD 121
++ LPCVIYCHGNSGCRADA+EAA++LLPSNIT+FTLDF+GSGLSGGE+V+LGW+EK D
Sbjct: 61 EDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNEKDD 120
Query: 122 LKCAVSFLRNNKEVSCIGLWGRSMGAVTSLLYGAEDPSIAGLVLDSAFSNLYDLMMELVD 181
LK V +LR + VS IGLWGRSMGAVTSL+YGAEDPSIA +VLDS FS+L DLMMELVD
Sbjct: 121 LKAVVEYLRTDGNVSLIGLWGRSMGAVTSLMYGAEDPSIAAMVLDSPFSDLVDLMMELVD 180
Query: 182 VYKIRVPKFTVKMAVQYMRRVIQRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPH 241
YK R+PKFT+K A+QYMRR +Q++A F+I DL+ ++ A F+P LFGHA +D FIQPH
Sbjct: 181 TYKFRLPKFTIKFAIQYMRRAVQKKANFNITDLNTIKVAKSCFVPVLFGHAVDDDFIQPH 240
Query: 242 HTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSIFFYNVLHPPQF--PSVCSNKLDKY 299
H++RI++AY GDKN+IKFDGDHNSPRPQFY+DS++IFF+NVL PP+ P+ + +D Y
Sbjct: 241 HSERIYEAYIGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEVVGPTFF-DPVDDY 299
Query: 300 YNLGAF 305
+ G++
Sbjct: 300 FAKGSW 305
>AT3G23540.1 | chr3:8443665-8448070 FORWARD LENGTH=567
Length = 566
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 197/312 (63%), Positives = 249/312 (79%), Gaps = 1/312 (0%)
Query: 2 IEQFVNFVIRPPRAEYNPDQYLWEPEFTLAGRKYKRIDLELTNGRDQTLKCSHYVPAVIP 61
++Q VNF+IRPPRAEY+P+ L E +F + GR Y+R DLE+ N R L+CSHY+P P
Sbjct: 1 MDQLVNFIIRPPRAEYDPEHDLLEKKFMMKGRWYQRKDLEVKNSRGDVLQCSHYMPVERP 60
Query: 62 DNTALPCVIYCHGNSGCRADANEAAVILLPSNITLFTLDFAGSGLSGGEYVSLGWHEKQD 121
+ LPCVIYCHGNSGCRAD +EAA++LLPSNIT+FTLDF+GSGLSGGE+V+LGW+EK D
Sbjct: 61 EGKPLPCVIYCHGNSGCRADGSEAAIVLLPSNITVFTLDFSGSGLSGGEHVTLGWNEKDD 120
Query: 122 LKCAVSFLRNNKEVSCIGLWGRSMGAVTSLLYGAEDPSIAGLVLDSAFSNLYDLMMELVD 181
LK V FLR + +S IGLWGRSMGAVTSL+YG EDPSIAG++LDS FS+L DLMMELVD
Sbjct: 121 LKAVVEFLRQDGNISLIGLWGRSMGAVTSLMYGVEDPSIAGMILDSPFSDLVDLMMELVD 180
Query: 182 VYKIRVPKFTVKMAVQYMRRVIQRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPH 241
YK R+PKFTVK A+Q+MRR IQ++AKFDIM+L+ ++ A +F+P LFGHA +D FI+PH
Sbjct: 181 TYKFRLPKFTVKFAIQFMRRAIQKKAKFDIMELNTIKVAKASFVPVLFGHALDDDFIRPH 240
Query: 242 HTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSIFFYNVLHPPQFPS-VCSNKLDKYY 300
H+DRI++AY GDKN+IKF GDHNSPRP FY+DS++IFF+NVL PP+ + LD Y+
Sbjct: 241 HSDRIYEAYVGDKNIIKFPGDHNSPRPPFYFDSINIFFHNVLQPPEVVGPTFYDPLDDYF 300
Query: 301 NLGAFKVGAGTN 312
G++ TN
Sbjct: 301 ANGSWGTMNDTN 312
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,816,008
Number of extensions: 462664
Number of successful extensions: 1018
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 3
Length of query: 502
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,282,721
Effective search space: 3304805679
Effective search space used: 3304805679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)